v202-final - 10 Mar 2009
(Pairings)
Code changes:
- Modified lib/hgExp.c -- changed expRatio column type so that it doesn't
require a knownTo* table, rather a "null" indicates that the microarray table
uses knownGene identifiers. (Andy)
- Added outside link to microarray custom tracks in hgc/expClick.c. (Andy)
- Added several mods to support HapMap Phase III SNPs, including use of
observed heterozygosity rather than the expected heterozygosity used for
Phase II, fixed avg. obs. het. calc. (Angie)
- Added support for hg18 hapmapSnpsPhaseII track (replaced by new PhaseIII
track, but retained for historic purposes. (Angie)
- Mods to ENCODE submission pipeline. (Galt)
- Added https support. (Galt)
- Added mods to support optional external libs, motivated by need for SSL.
(Galt)
- Ongoing work on bigWig. (Jim)
- Added functions to inc/psl.h to get block ends. (Mark)
- Mods to ENCODE validator and loader. (Mike)
- Fixed filterByScore assumptions in lib/hui.c. (Tim)
- Fixed gray level code to use ClosestToHome and cart valuess. (Tim)
Data changes:
- Added hg18 HapMap Recomb Rate (rel22) and updated HapMap SNPs (rel27).
(Angie)
- Added hg18 HGDP data. (Angie)
- Initial work on hg19. (Hiram)