v212-preview - 27 July 2009    (Pairings)

Code changes:

• Upgrades to ENCODE submission pipeline (Galt, Larry, Mike)
• Tweaks to warning box (Angie)
• Enabling BAM output type in browser (Angie)
• Fixed memory leak in hgLiftOver (Hiram)
• Adding haval, an md5 alternative (Jim)
• Refactoring bedGraphToBigWig to put more code in libraries for reuse and to clean up (Jim)
• Fixed bug when doing stranded overlap with PSLs (Mark)
• Fixed null pointer and memory leak in MAF display (Mark)

Data changes:

• More new ENCODE Data (Andy, Brian, Kate, Mike)
• Human Proteins for loxAfr3 (Brian)
• Starting elephant browser (loxAfr3 - Loxodonta africana) (Hiram)
• Starting C. elegans browser (ce8) (Hiram)
• Starting Caenorhabditis brenneri browser (caePb2) (Hiram)
• Starting Caenorhabditis japonica browser (caeJap2) (Hiram)
• 44way phyloP update for hg18 (Kate)