v222-preview - 4 January 2010    (Pairings)

Code changes:

• More support for BAM and remote files (Angie)
• New features for ENCODE validator (Brian, Tim)
• Allow whisker plots to display colors for pos and neg values (Hiram)
• Add sequence count to chromInfoPage (Kate)
• Automating the previously-manual ENCODE reporting spreadsheet (Kate)
• Merged in view-in-the-middle code branch for trackDb*ra files (Jim)
• encodePatchTdb program (Jim)
• Ongoing work on right-click image menu (Larry)
• Removed fixed-length restriction on size of item names (Mark)
• Modified extFile updating to match new server configuration (Mark)
• Fixed cvs-reports to correctly handle branch merges (Mark)
• Changed content-type for DAS results to text/xml (Mark)

Data changes:

• danRer5 liftOver to danRer6 (Angie)
• bosTau4 liftOver to bosTauMD3 (Galt)
• More ENCODE data (Brian, Kate, Tim)
• danRer6 chains/nets/liftOvers to/from mm9, gasAcu1, xenTro2 (Galt)
• Burge RNA-seq data for hg18, hg19 (Rachel)
• Exoniphy track for hg19 (Rachel)
• Retrogene track for hg19 (Rachel)
• Converted all remaining chain and net tracks to chainNet Composites(Hiram)
• Initial work on panda genome: ailMel1 (Hiram)