v224-final - 2 February 2010    (Pairings)

Code changes:

• Fixed bug - we used incorrect gap penalties to calculate chain score in window. (Angie)
• Fixing big* programs so that while you have to be sorted within a chromosome, the chromosomes themselves need not be sorted. (Jim)
• Rough prototype for search tracks. (Larry)

Data changes:

• More ENCODE data. (Brian, Melissa, Tim)
• Added sex information to ENCODE cell lines in cv.ra. (Melissa)
• danRer6 download files. (Galt)
• New data for the genomic segmental duplications track for hg19. (Rachel)