v231-final - 17 May 2010    (Pairings)

Code changes:

• Populating new metaDb directories with metadata. (Brian)
• Created converter for tagAlign to SAM format. (Bernard)
• ENCODE support programs. (Krish)
• Fix to isPcr for primers that match but dangle off the ends of the chrom. (Galt)
• More work on multiwig display: UI page, overrides, schema link, visibility, different drawing methods.(Jim)
• Fixed GCC within pipeline. (Mark)
• More work on GUI V2. (Tim)
• Added composite filter boxes. (Tim)

Data changes:

• Final polish of Neandertal tracks (hg18, panTro2). (Angie)
• Retrogene tracks for hg19, mm9. (Robert)
• New Affy tracks for hg19: Affy_U133Plus2, Affy_U95. (Chin)
• More work on Conservation tracks for calJac3, felCat4. (Chin)
• More ENCODE data. (Brian, Cricket, Tim, Venkat)
• More work on Mapability tracks for hg18, hg19. (Rachel)
• Burge RNA-seq data tracks for hg18, hg19. (Rachel)