v262

Code changes:

• Check for illegal chromosomes in bam and big* custom track loaders (#2572). Larry
• Fix pack option missing from blat and some other tracks (#6632). Larry
• Fix IE 8 problem in hgTrackUi (#4665#note-44). Larry
• Suppress too verbose messages generated by loading some bams (#6491). Larry
• Add synonym for stop-loss SNPs, which appears in snp135 SNPs (#6419). Larry
• Check syntax of urls in "add hubs" tab (#6505). Larry
• Added a utility to check to see if a twoBit file has duplicated sequences. Brian
• Support the nextItem button on custom bigBed tracks (#947). Brian
• Massive check in from branch for #4665 (subtrack cfg) feature and the #4892 (composite/view/subtrack inconsistencies) bug. Tim
• Fix for drag-n-drop conflict with subtrack cfg in hgTrackUi subtrack list. Tim
• Fix to supertrack reshaping when superChild was downloads only. Tim
• Fix to subtrack vis n ot getting to cart if populated by wrench-click. Tim
• Fix to allow composites that are not packable. Tim
• Fix to tolerate numeric trackDb tags in hgTrackUi (#6583). Tim
• Fix to resize subtrack cfg box so that controls do not extend outside of it (#6655). Tim
• trackDb makefile improvements. Hiram
• Fixed bug in simple repeat automatic script. Hiram
• VCF: represent missing data properly in INFO and GT fields (#6529). Angie

Data changes:

• 60-way phylogenetic treee checked into src/hg/utils/phyloTrees/. Hiram
• Initial browser builds for evaluation purposes: Squirrel Monkey saiBol1 , Coelacanth latCha1, Rhesus rheMac3, Chicken galGal4, Chimp panTro4, Dog canFam3. Hiram