v265
- v265 Preview 1 - 13 Mar 2012
- v265 Preview 2 - 20 Mar 2012
- v265 Final - 27 Mar 2012
Code changes:
- Changed PDF output to play down postscript. Max
- Fixed error in usage message in bedGraphToBigWig. Hiram
- Started work on fasta-subseq replacement script: fastsSubseq. Hiram
- Added stricter error checking to bulk mysql loaders (hgLoadBed, hgLoadMaf, hgLoadWiggle). Galt
- Initial work on variant annotation integration tool (#6152). Angie
- Started work on annoGrator genePred disruption class (#6152). Brian
- Added new keyword abbreviations for display of ISCA track (#7090). Angie
- Fixed minor table browser display problem with BAM quality scores containing lthan or gthan (#6573). Jim
- Fixed Table Browser bug where there is a table tag in trackDb.ra but no track
tag of the same value (part of #7222). Jim
- Improved commenting of newProg. Jim
- Fixed a bug where in wgEncodeRegTfbsClustered the score sometimes was larger than the max of the components visible on the details page. Jim
- Added search-ability for tableName advanced track search (#7005). Venkat
- Removed search-ability for fileType, suppressed term info links in advanced track search (#7100). Venkat
- Ongoing work on alternate login system (#6845). Chin
- Fixed score filtering on bigBed's that are bed9's (#7261). Brian
- Improvements to pgSnp detail page display (#7054). Belinda
- Fixed Downloads link for ENCODE track where table and track name are not matching (#7376). Larry
- Forced BLAT results to show up at the end of other tracks in the group (#7343). Larry
- Made RGD Genes show up in search results (#7155). Larry
- Fixed problems with in-place update when center and left labels are turned off (#7306). Larry
- Fixed missing pack visibility for pgSnp tracks (#7055). Larry
- Released ENCODE DataMatrix, displays real-time summaries of datasets (#5149). Kate
Data changes:
- Ongoing work on publications track (#6833). Max
- Restored the NCBI Incident (and GRC Incident) tracks to operation after NCBI change in XML definition (#6927). Hiram
- GRC Incident database track (#6702). Hiram
- Started work on browser for rat, rn5 (#7269). Hiram
- Started work on browser for bushbaby, otoGar3 (#6349). Hiram
- Started work on browser for squirrel, speTri2 (#7319). Hiram
- Started work on mm10 Conservation track 60-way (#7038). Hiram
- Reloaded chrM ensGene for hg19 since they need to lift from chrM_rCRS to chrM (#7339). Hiram
- Finished genscan track for Tasmanian Devil, sarHar1 (#4542). Chin
- Ongoing work on browser for Rhesus Macaque, rhemac3 (#6144). Chin
- Started work on UCSC Genes for mm10 (#7045). Brian
- Fix to Retroposed Gene trackDb entry (#7349). Tim