v267
- v267 Preview 1 - 30 Apr 2012
- v267 Preview 2 - 7 May 2012
- v267 Final - 14 May 2012
Code changes:
- Improved cpgIsland script to allow kluster runs on assemblies with 100s of
thousands of contigs. Hiram
- Automated genscan run for new assemblies. Hiram
- Fixed vegaGene (#7403). Hiram
- Prototyped for new minimalist Gateway page. Hiram
- Fixed bug in gsBig.c program to eliminate its garbage temp files properly.
Hiram
- Created new Login/Signup system: hgLogin (#6845). Chin
- Initial work on UI skins (#7867). Max
- added alwaysZero support to multiWig (#7905). Brian
- Added "check all/clear all" buttons to transparent overlay tracks in the
integrated regulatory ENCODE supertrack. Jim
- Fixed missing "c=chromName" in many hgc URLs (#7782). Jim
- Fixed missing "body" and "html" tags in mRNA details page (#7914). Jim
- Changed htmlCheck to avoid useless reporting of 405 errors in the checkLink
- Ongoing work on hgVarAnnogrator UI: position input, store search spec in cart,
handle back button (#6152). Angie, Brian
- BAM UI bugfix - Global minimum alignment quality score is not reflected in the sub-tracks (#7101). Angie
- Improved speed of Publications Marker Band track. Larry
- Made sqlList dynamic arrays thread-safe but just as fast (#7850). Galt
- Added keepalive call to prevent cgiApoptosis() from terminating a legitimately busy long-running process. Galt
- Made unsigned types in sqlNum errAbort on empty input like the other types do. Galt
- Extended ENCODE experiment matrix to work on Mouse ENCODE data (#7972). Kate
Data changes:
- liftOvers among mice: mm6, mm8, mm9, mm10. Hiram
- Added support for IUPAC nucleotide ambiguity codes to 'short match' track (#7913). Jim