v268

Code changes:

• New Login/Signup system (hgLogin) (#6845). Chin
• Support for views for track type (Genome Variation Format) GVF (#7090). Angie
• ENCODE Experiment Matrix for mouse data. This web application provides real-time table and matrix summary view of ENCODE data that is available at UCSC (#7972). Kate
• hgTables now correctly filters on primary table identifiers even if no fields from the primary table are selected for output (#4009). Galt
• Use hgFixed.trackVersion.version (if available) for 'Data Version' in hgc and hgTrackUi (#8032). Larry
• Fixed hgEncodeVocab bug that failed to display Input when it was being treated as an Antibody (#8019). Cricket
• hgFindSpec has new -release option default alpha, and uses the release tags found in .ra files on include statements and stanzas; loadTracks now passes the -release option to hgFindSpec (#7334). Galt
• Mysql load error detection is now the default. Galt
• hgVarAnnogrator UI: added warning note (research use only), got javascript to pass jslint (thx Kate!), got javascript to work on IE & Chrome too (#6152). Angie
• Ongoing work on Variant Annotator (#6152). Angie & Brian
• HapMap LD checkbox javascript bugfix from Tim (plus sorting bugfix) (#8048). Angie
• Added support for per-chromosome big files for VCF db tracks (a la BAM) (#7964). Angie
• Fixed the script that generates the hgcentral.sql file on hgdownloads (#8036). Tim
• Initial draft of trackDbDoc.html (#5088). Tim
• Fixed bug in trackDb reading when "type bigBed" didn't have number of columns following it ( #8028). Brian

Data changes:

• 1000 Genomes Phase 1 Variant Calls (#7964). Angie
• ISCA data update (including 2 new Curated subtracks) (#7090). Angie
• IKMC mouse & human data update (#8017). Angie
• GWAS Catalog bi-monthly data update (#1656). Angie
• Ongoing work on mm10 UCSC Genes (#7045). Brian
• cow (bosTau7) assembly complete (#6044). Chin
• dog (canFam3) assembly complete (#6348). Hiram
• rat (rn5) assembly complete (#7269). Hiram
• tenrec (echTel1) assembly complete (#7671). Hiram
• turtle (chrPic1) assembly complete (#6718). Hiram
• chicken (galGal4) assembly complete (#251). Hiram