v269

Code changes:

• hgTables now properly filters on Ids and regions even if no field from primary table is in output or filter-tables (#8148). Galt
• Added bottleneck delay to hgTracks (#5729). Galt
• Added filtering fields in table browser for custom track bigWigs (by value, and limit on number) (#7013). Brian
• Added twoBitDup utility that warns if DNA sequences in 2bit are included more than once. Brian
• Enabled genbank runs euroNode machine (#3110). Brian
• New highlight mode in hgTracks used by GENCODE to highlight selected tracks. Brian
• Fixed BAM tag-printing bug reported by Sol: signed 8-bit ints were displayed as unsigned. Angie
• Fixed a stricter-gcc warning: string comparison using "==". Angie
• Minimal automatic gateway description now built into makeGenomeDb.pl script. Hiram
• Started collection of configuration files used with makeGenomeDb.pl that are used to start an assembly construction src/hg/utils/automation/configFiles/. Hiram
• Added featureBits to the userApps delivery. Hiram
• Set the wikiTrack to be read-only optional via hg.conf variable (#7750). Hiram
• A little polish for the new login system (#8250, #6937, #8223, #8294, #8210). Chin

Data changes:

• Ongoing work on mm10 UCSC genes (#7045). Brian
• Updated hgwdev's dgvBeta track (DGV has a beta site and associations with dbVar IDs that they plan to make public ~Aug.). Angie
• Started work on several assemblies: melUnd1, eriEur1, choHof1, gadMor1, oreNil2, micMur1, speTri2, pteVam1, proCap1, ochPri2, tupBel1, sorAra1, turTru2, vicPac1, tarSyr1. Hiram
• Finished assembly for Tasmanian devil, sarHar1 (#4542). Chin
• Conservation tracks for bosTau6 and bosTau7 (#6616, #8244). Chin