v271

Code changes:

• Added menus to all CGIs, use sans-serif fonts and change background of hgTracks (#5245). Larry & Greg
• Merged gene suggest into the position/search box (#5933). Larry
• Include description in gene suggest list (#5962). Larry
• Enabled highlighting for genes chosen via gene suggest (#6330). Larry
• Decommissioned the proteome browser (#5740). Brian
• Fixed buffer size problem in bed validation in validateFiles. Brian
• Don't send email to non-registered address from hgLogin (#8341). Chin
• Encode space character in the activation link in confirmation email sent to new user (#8693). Chin
• Edited makeGenomeDb.pl to modify the output on the gateway page regarding how to search gene (#8708). Chin
• Display Sequence Ontology (SO) terms instead of dbSNP-specific terms for functional effects on SNP details pages (#8551). Angie
• Fixed bug for haplotype-clustering display of haploid VCF with lots of no-calls (#7964). Angie
• Minor UI tweaks for BAM tracks (#8420). Angie
• Added -inline option to tdbQuery. Tim
• Fixed bug where dense subtracks with views could give misleading centerLabels (#6813). Tim
• Created new dynamic string stack print module, dsPrint. Tim

Data changes:

• Updated Patch track to patch9, hg19 (#7195). Hiram
• Built several assemblies including: choHof1, dasNov3, dipOrd1, eriEur1, felCat5, gadMor1, hetGla2, latCha1, melUnd1, micMur1, nomLeu2, ochPri2, otoGar3, papHam1, proCap1, pteVam1, panTro4, saiBol1, sorAra1, speTri2, susScr3, tarSyr1, triMan1, tupBel1, turTru2, oreNil2, vicPac1. Hiram
• Started assembly for Medium ground finch (aka Darwin finch) geoFor1 (#8626). Hiram
• Started assembly for Chinchilla, chiLan1 (#8476). Hiram
• LiftOver constructed: rn4 to rn5 (#8595). Hiram
• Chain/Net tracks for rheMac3 vs rn5, mm10, canFam3, calJac3, monDom5 and panTro4. Chin
• Started assembly for Yellow Baboon, papAnu2 (#8166). Chin
• GWAS Catalog bi-monthly update (#1656). Angie
• Ongoing work on mm10 UCSC genes (#7045). Brian