v277
- v277 Preview 1 - 3 Dec 2012
- v277 Preview 2 - 10 Dec 2012
- v277 Final - 17 Dec 2012
Code changes:
- Continued work on annoGrator: added bigWig support (#6152). Angie
- Minor tweak to html table structure for SQL set-field checkboxes used for SNPs, VCF options. Angie
- Added code to re-try a hub with an error message after a hg.conf configurable amount of time has passed (#9666). Brian
- Supertracks were being left out of the hub track name-polishing (#9254). Brian
- Fixed a problem in the table browser when track hubs have tables with dots in them. Brian
- Cleaned up cart call (don't look for hgg_chrom if we already have hgg_gene), (#9668). Brian
- Continued work on faux-centromere sequence generator with Karen Hayden. With luck this will be version used for first draft that we share outside of UCSC. Jim
- Improved htmlCheck utility slightly to make it stop complaining about an INPUT tag that was managed purely by JavaScript and thus had no need for a "name" attribute. Jim
- Used threads to process bigDataUrl customTracks in parallel (#9680). Galt
- Set CHARSET=iso-8859-1 for all hgLogin forms (#8742). Chin
- Started moving hg.conf's into source tree (#8383). Brian
- Corrected instructions for mirror site custom trash Db setups. Hiram
- Fixed bug in searching for cytoBand identifiers on mouse browsers (#8536). Hiram
- Created new trash directory hgtSide to alleviate congestion in hgt. Hiram
- Made user-friendly error message for oversized wiggle custom tracks directing users to bigWig procedures. Hiram
- Fixed the special-case code for Affymetrix Transcriptome Project track for hg17 (#7554). Tim
Data changes:
- Released dbSNP v137 for hg19 (#8360). Angie and Steve
- GWAS Catalog bi-monthly update, with snp137 coords (#1656). Angie
- DGV data update for hg17, hg18, hg19 (#9401). Angie
- Fixed the special-case code for AffyTxnPhase, hg17 (#7554). Tim
- Released mouse (mm10) UCSC genes including links to ExonPrimer (#7045, #8471). Brian and Luvina
- Released liftOvers for canFam3 to canFam2 (#9641). Hiram
- Started working on human (hg19) UCSC genes including new uniProt database (#9783). Brian
- Ongoing work on RetroFinder track (V4) for hg18, hg19, mm9 (#1513). Rachel and Robert
- Added new "assembly" for hg19 repeats to development machine. Max
- Started on Nuclear mitochondrial sequence tracks for cow (bosTau6) and pig (susScr2), (#8533). Chin
- Started on Ensembl Genes v69 (chrM comparison done), (#9409). Chin
- Started on ExonJunction Primers for mm10 and hg19 (#9269). Chin
- Started conservation track for rn5, which includes: galGal4, monDom5, bosTau7, canFam3, ailMel1, panTro4, cavPor3, danRer7, melGal1, and xenTro3 (#8212). Hiram