v278
- v278 Preview 1 - 7 Jan 2013
- v278 Preview 2 - 14 Jan 2013
- v278 Final - 22 Jan 2013
Code changes:
- Tweaks to internal script: checkStaticLinks. Bob
- Continued work on faux-centromere generation code. Jim and Karen
- Fixed bedGraphToBigWig to make it handle large input better (#9935). Jim
- Added CGI timing measurement for all CGIs to apache error_log (#9745). Hiram
- When Apache kills timed-out CGIs, we now trap SIGTERM and call exit to allow atexit to clean up (#9745). Galt
- euroNode menu: Added support for database table-based GUI menu items; Added support for hg.conf browser.geoSuffix for testing; Swapped out javascript for C in globalNav.inc (#7477). Galt
- Set up the correct udcCache directory in hgSession for bigDataUrl custom track loading (#9859). Galt
- Fixed unitProt's links back to the Genome Browser (#9668). Brian
- Removed link to the no longer maintained Stanford SOURCE database from refGene and few other places ( #9962). Brian
- Increased limit of trackDb.txt to 64Mb (#9937). Brian
- Made Genbank tracks fail more gently when sequence is missing (ie. when updates are turned off) (#3130). Brian
- Tweaks to VCF: tolerate Complete Genomics's AN=0 records. Angie
- Accommodate missing name/ID in DGV track details page (#9401). Angie
- Fixed Table Browser to display example identifiers on paste/upload page for bigBed data type (#9860). Angie
- Added hgc handler for the Numts and qPcrPrimers tracks (#9269, #8533). Chin
- Fixed bug in hgFileUi that caused track description to appear twice (#9944). Kate
- Added hgc handler for DNase Clusters V2 track for hg19 (#9954). Kate
- Changed hgc peak cluster handler to sort on metadata (#9954). Kate
- Changed hgTrackUi subtrack list default to 'all' if there is no matrix (#10016). Kate
Data changes:
- Updated COSMIC to v62 for hg19 (#9386). Hiram
- Created Coriell deletions/duplications track for hg19 (#6530). Hiram and Bob
- Added Affy CytoScan to arrays track for hg19 (#4915). Bob
- Completed Mouse GRCm38 Patch 1 track (#8909). Hiram
- Completed Human GRCh37 Patch 10 track (#9066). Hiram
- Added alternate mouse strains/variants track to mm10 (#7341). Hiram
- Added xenoRefGene to the list of fasta files that we build for download (#9991). Brian
- Upgraded OMIM track to use snp137, hg19 (#7311). Brian
- Ongoing work on UCSC genes for hg19 (#9783). Brian
- Loaded SNPs v137 for mm10 (#7043). Angie
- Completed qPcrPrimers track for mm10 and hg19 (#9269). Chin
- Completed Numts tracks for bosTau6 and susScr2 (#8533). Chin
- Created liftOver to/from papHam1 <-> papAnu2 (#9965). Chin
- Released ENCODE Uniform DNaseI HS track for hg19 (#9850). Kate