v279
- v279 Preview 1 - 28 Jan 2013
- v279 Preview 2 - 4 Feb 2013
- v279 Final - 11 Feb 2013
Code changes:
- Fixed udc cache location problem related to saved sessions and early cart processing (#9859). Galt
- Started to clean up hgVarAnnogrator JavaScript per Brian Craft's suggestions (#6152). Angie
- Fixed bigBedIntervalQuery and hgc to not drop 0-length items (insertions) (#8886). Angie
- Added maxWindowToDraw to dense VCF tracks' trackDb entries (#8886). Angie
- New error check in checkTableCoords to avoid segfault on bogus bed12. Angie
- Added missing implementation of TB paste/upload IDs for bigBed (#9860). Angie
- Small bugfixes in hgVarAnnogrator (#6152). Angie
- hgc: Display detail page of susScr2's NumtS tracks item (#10150). Chin
- New version of repeat masker installed in our infrastructure. Hiram
- Minor fix to liftUp for new RepeatMasker operations. Hiram
- New RepeatMasker version causes trouble with hgLoadOut, fixup hgLoadOut.c and twoBitMask (RM is going to fix this itself in a patch). Hiram
- Smartened up hgFileUi to recognize when ENCODE restriction timestamps are in effect (#10006). Kate
- Enlarged buffer that overflowed with huge trackUi matrices (#10154). Kate
- Fixed sort by metadata ordering in the 'Assayed cells' section of details page of Clusters tracks (#9954). Kate
- Performance improvement to genbank dumps of all assembly table status dumps: added sleeps. Brian
- Fixed error in bedToPsl. Brian
- Ongoing work on Gene Alleles (#9093). Tim
- Ongoing work on Haplosufficiency Map (#7915). Tim
- Fixed invalid assert in hgTrackUI JavaScript code that caused weird error messages for certain tracks (#10174). Tim
- Ongoing work on faux centromere generation code. Jim & Karen
Data changes:
- GWAS catalog update for hg18, hg19 (#10098). Angie
- Some work on DGV update but still hoping for some corrections, hg17, hg18, hg19 (#9401). Angie
- Created hg19 to panTro4 liftOver (#10041). Angie
- Fixed external URL for Coriell track for hg19 (#6530). Hiram
- Final touches for White Rhino (cerSim1) browser (#8752). Hiram
- qPcrPrimers track for mm10 and hg19 (#9269). Chin
- Numts tracks for pig (susScr2) (#8533). Chin
- Completed and released ENCODE Regulation: DNase Clusters track for hg19 (#9954). Kate
- Loaded data and configured track for ENCODE Uniform TFBS for hg19 (#10042). Kate
- Finalized Pfam track for hg19 (#9135). Brian