v280
- v280 Preview 1 -19 Feb 2013
- v280 Preview 2 -25 Feb 2013
- v280 Final -4 Mar 2013
Code changes:
- Fixed problem in hub support for 'parent' setting when used by superTrack 'children' (#9751). Kate
- Fixed right-click getDna link to use session ID and database (#10276). Kate
- Added highlighting of GENCODE transcripts based on annotation method. Mark
- Fixed GENCODE bug with annotation method filtering for 'automatic'. Mark
- Added support to GENCODE for filtering by 'manual and automatic' method. Mark
- Added support for Nuclear mitochondrial sequences and Whole Transcriptome qPCR Primers tracks. Chin
- New utilities: wordsInEachLine and reverseLineOrder. Jim
- Started work on transparency code (#1049). Jim
- Added SNP molType=mito filter/color support (#7043). Angie
- Variant Annotation Integrator support for filtering {variant x gene} results to CDS-only (#6152). Angie
- Made some makefile tweaks to support altered HG_WARN in top-level build, for systems whose gcc has over-the-top -Wall. Angie
- Fixed Cosmic external links for the hgc clicks to their site (#9386). Hiram
- Support drag-select in ideogram even if it has only one bar (#10285). Brian
- Added support for UDCcache in twoBit library (#10237). Brian
- Initial support for assembly hubs (#8072). Brian
- Fixed problem with lmCloneString not handling a NULL input correctly (#10199). Brian
Data changes:
- Ongoing work on Retroposed Genes track v4, hg19, hg18, mm9 (#1513). Rachel
- Ongoing work on ENCODE Uniform TFBS, hg19 (#10042). Kate
- Updated Ensembl Genes to v70 (#9407). Chin
- Started work on browser for gibbon (nomLeu3), (#9812). Pauline and Hiram
- Started work on browser for southern platyfish (xipMac1), (#6762). Chin
- Started work on browser for bonobo (panPan1), (#8231). Chin
- Fixed DGV label and search issues (#9401). Angie
- Updated Cosmic track to v63. It is now auto-pushed weekly (#9386). Hiram