v281
- v281 Preview 1 - 11 March 2013
- v281 Preview 2 - 18 March 2013
- v281 Final - 24 March 2013
Code changes:
- Reduced memory use of pslMap by up to two orders of magnitude. Mark
- Added hints about how to improve browser images for publications (#10317, #1077). Max
- Fixed bug where session custom tracks are clobbered when original hgsid session modifies CTs (#10396, #10323). Angie
- Added support for HGVS's chromosome range format with "_" (#10392). Angie
- Massaged some code that loads sessions to be more assembly hub aware. Brian
- Fixed to twoBitIsFile to not crash if given a directory. Brian
- Ignore join operator in miscdiff genbank records (only appeared in one record). Brian
- Bug fix in parasol for errAbort threads when out of memory. Galt
- Changed the transparency so that it shows up in PDF, and also can be normalized when we add more cell lines (#1049). Jim
- Added option to index name or other string fields in bigBed (#10299). Jim
- Added support for multiple values with same key to bPlusTree. Jim
- Exposed bwgCreate function so it can be used outside of it's source module at Diane Trout at Caltech's request. Jim
- Fixed a bug where sometimes zoom summaries would not be written out by bedGraphToBigWig (#10409). Jim
- Fixed bug in new version of RepeatMasker. Hiram
- Ongoing work on Variant Annotation Integrator tool: bugfixes, baseline VEP-formatted output (#6152). Angie
- Ongoing work on faux centromere generation code. Jim and Karen
- Ongoing work on redirecting users to/from euroNode (#3104). Galt
- Ongoing work on assembly hubs (#8072). Brian
Data changes:
- Imported precomputed SIFT, PolyPhen2, and several other scores from database of Non-Synon Functional Predictions (dbNSFP) for annoGrator (#6152). Angie
- Added *.as files for all the *BlastTab files so their descriptions will be more useful (#9363). Brian
- Polished Numts tracks for pig (susScr2) (#8533). Chin
- Completed Ferret/musFut1 browser built (#6352). Hiram
- Added quality track for Lizard/anoCar2 (#10350). Hiram
- Ongoing work on 100-way phylo tree (#10272). Hiram
- Ongoing work on bonobo browser, panPan1 (#8231). Chin
- Ongoing work on ENCODE Uniform TFBS track (#10042). Kate