v282
- v282 Preview 1 - 1 April 2013
- v282 Preview 2 - 8 April 2013
- v282 Final - 15 April 2013
Code changes:
- Created a secure and sharable sendmail utility: mailViaPipe (#9752). Chin
- Used mailViaPipe for hgLogin (#8920). Chin
- Fixed bug with cookies in hgLogin (#9662). Chin
- Overhauled makefile system (#9104). Hiram
- Found and fixed a problem with excessive activity in custom tracks by adding a 1000 track limit per submission (#10599). Hiram
- Added anti-alias lines to browser image. Brian
- Added udcDir option to twoBit utilities (#8072). Brian
- Created new utility (bedScore) that assigns (or transforms) score field in BED files, based on values in a selectable column of the file, using user choice of 4 algorithms (#10569). Kate
- Starting work on a tag-storm format (hierarchical .ra) for use in storing metadata. Jim
- Ongoing work on annoGrator: performance comparison of several SQL query/sorting methods; improved annoStreamDb performance (query results begin streaming almost immediately); use localmem for annoRow and local scratch storage; saves time and patches mem leaks; added annoStreamTab for arbitrary tab-separated file (w/autoSql for IDing coord columns) (#6152). Angie
- Refactored and extended gadPos program to use Gencode as another gene symbol lookup (#10449). Angie
- Ongoing work on euroNode, genBank (#10463). Brian
Data changes:
- Created Genscan track for macEug2 (#7252). Chin
- Ongoing work on Retroposed Genes tracks for hg19 and mm10 (#3867). Rachel
- Started work on browser for parrot (amaVit1) assembly (#10144). Hiram
- Created chains/nets: mm9 to/from rn5 (#10398). Hiram
- Updating GAD data (#10449). Angie
- Updated GO database to be pushed with UCSC genes (#10492). Brian
- Updated KEGG link-outs (#10481). Brian
- Automated the updates for the GWAS track (#5172). Brian
- Created ENCODE Uniform TFBS track (#10024). Kate