v286
- v286 Preview 1 - 24 June 2013
- v286 Preview 2 - 1 July 2013
- v286 Final - 8 July 2013
Code changes:
- Made the userApps easier to build (#9149). Hiram
- Added Ensembl navigation link to assemblies as appropriate (#11114). Hiram
- Fixed hgConvert so that it doesn't die if the other assembly is not in dbDb. Hiram
- Released final version of the Variant Annotation Integrator (hgVai) and documentation (#6152). Angie
- Fixed text display for warning in hgVai and hgTables (#10964, #6152). Angie
- Used the new NCBI link to display GeneReviews article (#10993). Chin
- One more anti-spam trick for hgUserSuggestion (# 11139). Chin
- Fixed buffer overflow in hgTracks (#11127). Brian
- Fixed bug with the memory in track hubs. Brian
- Fixed link-outs to Biocyc and uniprot splice isoforms. Brian
- More clean-up of sqli code (#9107, #11111). Galt
- Handle HTTPS for redirects between UCSC and other official mirror sites like genome-euro. Galt
- Fixed obscure bug in dumpstack to use _exit instead of exit so that the child cleanup will not close the mysql connections that are shared with the parent process. Galt
- Fixed a minor bug in pushCarefulMemHandler mutex handling (#11046). Galt
Data changes:
- Started work on GenBank DNA track. Max
- New assembly vicPac2/Alpaca (#10833). Hiram
- New assembly allMis1/Alligator (#8750). Hiram
- Created rn5 NCBI cytoBand track (#8529). Hiram
- Ongoing work on the 100-way analysis (#10272). Hiram
- New assembly echTel2/Tenrec (#9693). Hiram
- Added Complete Genomics and others to Genome Variants track (#683). Angie
- Completed NumtS tracks for pig (susScr2) and cow (bosTau6) (#8583). Chin
- Generated new ucscGenePfam table. Brian
- Finished and released updated hg19 UCSC Genes track (#9783). Brian and Luvina
- Updated Old Known Genes track to the new old data, hg19. Brian
- Fixed name similarity sort for rn4 (#7129). Brian
- Updated documentation for assembly hubs. Pauline and Brian
- Reloaded Comparative Toxicogenomics Database table. Brian