v298
- v298 Preview 1 - 24 March 2014
- v298 Preview 2 - 31 March 2014
- v298 Final - 7 April 2014
Code changes:
- Fixed Table Browser test robot (#12803). Hiram
- Allow user to select which gene name to display in Ensembl Gene tracks (#12870). Hiram
- Fixed link to NCBI for hg19 (#12871). Hiram
- Increased buffer size in hubConnect to deal with huge data sets: e.g. 100-way. Brian
- Ongoing work on Genome Browser in a Box (GBiB) including tweaks to VAI, hgLiftOver, and nib file access (#11957).
- Fixed the glibc malloc for multiple threads to work using RSS instead of DATA for rlimit. Galt
- Made the UI more user-friendly in the Hub Portal by making a click-able expansion of assembly lists (#12602). Galt
- Removed some labels in ENCODE2 dataset's metadata, because it tripped a bug in both track and file search (#12946). Tim
- Added support to Exome Variants (evsEsp6500) track. This data is in VCF format but uses a couple of non-standard tags (#9329). Tim
- Working to turn the Gene Reviews track into an automatically-updating track (#11226). Chin
- Moved json writing routines from inside of the ENCODE pipeline programs to a jsonWrite module in src/lib, and extended them a bit. Jim
- Corrected -defaultZero behavior on fixed-size character arrays. Jim
- Fixed bug in which a symbolic position could get stuck in the cart (#13009). Angie
Data changes:
- Completed new browser for Minke whale balAcu1 (#12977). Hiram
- Completed new browser for Elephant shark calMil1 (#12976). Hiram
- Added URL links to genbank accession for the ContigDiff tracks (#13005). Hiram
- Created generic description page text for cpgIslandExt and cpgIslandExtUnmasked supertrack (#12977, #12976). Hiram
- Added links from UCSC Genes to Lynx (#12123). Brian
- Added links from UCSC Genes to neXtProt (#11888). Brian
- Ongoing work on UCSC genes for mm10 (#12639). Brian
- Ongoing work on UCSC genes for hg38 (#12832). Brian
- Ongoing work on Uniprot and proteome databases (#12639, #12832). Brian
- Started work on rn5 13-way Conservation track (#8212). Pauline
- Rebuilt SNP v138 for hg19 with updated download files from dbSNP (#12975, #11438). Angie
- Fixed a checkHgFindSpec -checkTermRegex warning. Angie