v299
- v299 Preview 1 - 14 April 2014
- v299 Preview 2 - 21 April 2014
- v299 Final - 28 April 2014
Code changes:
- Created new display method: stacked overlay mode for multiWigs (#11630). Brian
- Tuned performance of initial display of public hub list (#13122). Brian
- Compacted the snakes/HAL display (#10637). Brian
- Fixed multiple alignment tracks when viewed with the visibility set to squish (#13100). Brian
- Fixed bug in main display, where items were being drawn in the wrong place due to small calculation error (#13087). Tim
- Suppress "Variant Identifiers" option in VAI for assemblies without a SNP table (#13085). Angie
- Fixed bug in hgc where printCustomTrackUrl was called twice for VCF/tabix (#9329). Angie
- Fixed bug in hgc for pgSnp data types: don't look ahead to next exon from last exon (#13089). Angie
- Detect but tolerate extra tab at end of line from 1000Genomes phase1 VCF files (#13091). Angie
- Handle "chr"-less VCF files (#13093). Angie
- Ongoing work on Genome Browser in a Box (GBiB) including committing all configuration files (#11957). Max
Data changes:
- Tidied up a few issues in UCSC Genes for hg38: fixed problem in tRNA gene symbols have garbage at the end, fixed bug in the creation of kgXref table (#12832). Brian
- Created best reciprocal blast mmBlastTab table (#12639). Brian
- Updated Gene Reviews track in response to new data file formats at NCBI (#7214). Chin
- Ongoing work on Exome Variants track (#9329). Tim
- Loaded segmental duplications track for mm10 (#12831). Pauline
- Completed ENCODE Segmentation track (#12259). Kate
- Turned on CCDS Genes v16 for mm10. Mark
- Updated master phylo-tree with the 126 genomes we now have. Hiram
- Completed new assembly browser for criGri1/Chinese hamster (#6506). Hiram
- Completed new assembly browser for eriEur2/Hedgehog (#9419). Hiram
- Completed new assembly browser for taeGut2/Zebra finch (#10190). Hiram
- Completed new assembly browser for ochPri3/Pika (#9347). Hiram