v306
- v306 Preview 1 - 8 Sept 2014
- v306 Preview 2 - 15 Sept 2014
- v306 Final - 22 Sept 2014
Code changes:
- Created tool to lift UniProt annotations to a genome: uniprotLift. Max
- Created a tool to fix overlapping bed blocks, created by dnax blat and pslMap on protein psl files: bedFixBlockOverlaps. Max
- Fixed copyHgcentral script - changed the way the organism name is retrieved (#13121). Steve
- Added trackLog entry to hg.conf (#13626). Steve
- Corrected VCFs in hgTracks: detect haploid sequence properly instead of matching "chrY". Angie
- Fixed missing NULL check in hacTree.c. Angie
- Started work on program that makes a track hub for the hg38 DNAse data. Jim
- Ongoing work on parallelized version of hacTree. Jim
- Added "showSnp" mode to MAF display which shows red ticks for mismatches. Brian
- Modified gff3 library to tolerate missing phase keyword. Brian
- Modified hgHubConnect to not redirect to hgGateway if error on hub load (#13992). Brian
- Added exon frames if missing in genePredToBigGenePred (#13861). Brian
- Stripped tabs from custom track descriptions causing javascript crash (#13976). Brian
- Fixed bedToBigBed crash when trying to create an index on a non-existant field (#13928). Brian
Data changes:
- Created and released Ebola virus portal and genome browser (eboVir3) with annotation tracks and details pages (#14011). Everyone!
- Started work on new cow browser - bosTau8 (#13852). Steve
- Created Quantitative Trait Locus (QTL) track for horse, equCab2 (#13957). Steve
- Created SNP v141 tracks for human: hg19 and hg38 (#13309). Angie
- Completed Retroposed Gene tracks: v5.0 for mm10, and v8.0 for hg38 (#13817, #13816). Rachel
- Completed DNaseI Hypersensitive Site Master List from ENCODE/Analysis, hg19
(#13230). Kate
- Updated DNase Clusters track to v3 (#13490). Kate
- Reorganized chain/net composite track structure on hg19 (#10272). Hiram
- Added hgLoadOutJoined utility to User Apps (#9149). Hiram
- Updated CCDS data format. Brian