v307
- v307 Preview 1 - 29 Sept 2014
- v307 Preview 2 - 6 Oct 2014
- v307 Final - 13 Oct 2014
Code changes:
- Added new program (written in both C and in perl): pslScore program to calculate pslScore (#14011). Hiram
- Created new utility, mafToSnpBed, used in construction of tables used in the new SNP-oriented MAF display (#14055). Brian
- Added mafToSnpBed utility (see above) to the apps released to users (#14079). Hiram
- Fixed bug in chrom ideogram position-selection. Angie
- Fixed a bug in hgVai: added hReplaceGbdb in several places where it was missing. Angie
- Fixed the case where sometimes hgc click boxes in snakes were being set with negative
coordinates which was confusing our slice management. Brian
- Fixed a problem in MAF display resulting in empty displays when the start address was 1 or 2 (#14132). Brian
- Added an option to mafGene to output a unique character for every codon (#14055). Brian
- Added MAF SNP view to MAF display (#14055). Brian
- Completed GBiB product for initial release (#11957). Max
Data changes:
- Added Genes for all Ebola and Marburg sequences to marVir1 and eboVir2. Hiram
- Created FlyBase Gene set for dm6 (#14024). Hiram
- Started work on cow assembly browser, bosTau8 (#13852). Steve
- Created liftOver files for hg16 and hg17 to hg38 requested by DGV collaborators. Angie
- Added chrX_*_alt entries to par table for alts that overlap a PAR. Angie
- Updated snp141 for hg38 to fix incorrectly assigned MultipleAlignments due to PAR1 X alts (#13309). Angie
- Ongoing work on eboVir3 browser: Corrected MAF frames on the 160-way conservation track for eboVir3 (#14011 Hiram); Improved track descriptions (Angie)
- Changed GWAS pipeline to keep up with their column name changes. Brian
- Changed CCDS pipeline to keep up with their table changes. Brian
- Update to Peptide Atlas track description (#14054). Kate