v308
- v308 Preview 1 - 20 Oct 2014
- v308 Preview 2 - 27 Oct 2014
- v308 Final - 3 Nov 2014
Code changes:
- Small tweaks to GBiB product for initial release (#11957). Max
- Added support for GENCODE filter-by tag and highlight-by tag and annotation method. Currently only enabled in GENCODE V21. Mark
- Fix custom wiggle tracks on assembly hubs (#14168). Brian
- Started work on BAM density plots (turning BAMs into wiggles when they are too dense) (#952). Brian
- Removed VCF parser errors for missing ##INFO and ##FORMAT header lines (OK in spec) (#14231). Angie
- hgTables: allow start==end in user-defined regions BED (#14238). Angie
- hgTables: fixed popWarnHandler underflow condition that caused odd bug (#12557). Angie
- Added missing calls to setUdcCache in hgLiftOver, hgNear, hgVisiGene and phyloGif. Angie
- Fix organism list on hgMirror for GBiB so that it shows all assemblies (#14264). Max
Data changes:
- Automate updates to the NCBI ClinVar database track for hg19 (#14045). Max
- Ongoing work on new Clone Ends tracks for hg19, hg38. Max
- Completed new cow assembly browser, bosTau8 (#13852). Steve
- Changed the frequency of GenBank updates for the non-human and non-mouse assemblies. They no longer update every day. Brian
- Fixed chrX_*_alt MultipleAlignments accounting hg38.snp141 tracks (#13309). Angie
- Added 'FLUSH TABLES' command to buildTableDescriptions.pl at Jorge's request. Angie
- Added exceptions to checkTableCoords for bacEnd and cloneEnd tracks that may have odd block coords by necessity. Angie
- Created phastCons and phyloP tracks for the eboVir3 160-way conservation track (#10411). Hiram
- Finished new Repeat Masker visualization for hg38 and mm10 (#9741). Hiram
- Created Genomic Super Dups track for hg38 (#13580). Hiram
- Created chain/nets from both bosTau6 and bosTau8 to equCab2 (#14221). Hiram
- Completed Mapping Genomic Positions on Protein Structures (MuPIT) track for eboVir3 (#14267). Hiram