v309
- v309 Preview 1 - 10 Nov 2014
- v309 Preview 2 - 17 Nov 2014
- v309 Final - 24 Nov 2014
Code changes:
- Created more informative error messages for connected hubs with errors (#14365). Brian
- Allowed for easier discovery of track hub track HTML (#13516). Brian
- Allow for missing hg.conf file (#14356). Brian
- Added support for bigGenePred in hubCheck and custom tracks (#14376). Brian
- Fixed integer overflow problem in bedToBigBed with indices (#14373). Brian
- Fixed crash in wgEncodeRegTfbsClusteredV3 track (#14368). Brian
- Added hubClear URL variable (#13382). Brian
- Clarified "hub not supported" message (#14133). Brian
- Automatically remove tabs from short and long labels in track hubs (#13741). Brian
- Created beacon program for GA4GH (#14393). Max
- Fixed hgTables to show example missing identifiers (#12687). Galt
- Added code for proteomics track support - PeptideAtlas (#14504). Kate
- Fixed bug in liftOver where annotations that ended at the exact end of a scaffold were not mapped. Mark
- Bolded canonical gene in search results page (#14372). Chris
- Fixed bug in hgVai that caused omission of many dbNSFP annotations. Angie
- Fixed imprecise display of total allele count for very rare variants. Angie
- Created utils/automation/simplePerl.pl scripts for example perl coding (#14358). Hiram
Data changes:
- Added linkout from UCSC Gene details pages to GENCODE (#14904). Brian
- Started work on new BACEnds track for hg19, hg38 (#14331). Max
- Ongoing work on Ebola portal and browser. Kate, Hiram
- Finalization of DNase Master Sites track data (#13230). Kate
- Updated Clinvar track and added it to the otto-matic update tracks (#14045). Max
- MaxCompleted new Clone Ends tracks for hg19, hg38 (#14331). Max
- Started work on new COSMIC track format (#14461). Steve
- Added Cooper Developmental Delay track to hg38 (#9391). Steve
- Finished dbSNP v142 tracks for hg19, hg38 (#14189). Angie
- Finished DGV tracks for hg18, hg19, hg38 (#14188). Angie
- Completed new Drosophila assembly browser, dm6 (#4049). Hiram
- Started work on new cat assembly browser, felCat8 (#14412). Hiram
- Started work on new tarsier assembly browser, tarSyr2 (#14410). Hiram