v312
- v312 Preview 1 - 2 Feb 2015
- v312 Preview 2 - 9 Feb 2015
- v312 Final - 16 Feb 2015
Code changes:
- Implemented changes to hgAi suggested in review of JS for new UI framework. Angie
- Fixed hgAi image-loading bug (#14579). Angie
- Fixed checkTableCoords to exit error status on error. Brian
- Updated ISCA otto scripts to understand changes in ISCA data. Brian
- Added tolerance for hash table reaching its max size rather than exiting. Brian
- Added support for bigBed custom tracks (#13861). Brian
- Fixed a bug that caused split tables to crash in the browser. Chris
- Extended mouseover to show exon and intron numbers for linkedFeatures tracks (#7474) and added
new trackDb setting "exonNumbers off" that allows track creators to suppress this new feature. Galt
- Added new lib/tagStorm.c module and several kent/src/tagStorm/tagStorm* utilities for building,
automatically processing and performing SQL-like queries of tagStorms (intended for working with
CIRM stem cell metadata and eventually track hub metadata). Jim
- Added command-line tool to inventory track settings in public hubs (hubTrackSettings)
(#10015). Kate
- Added command-line tool to check urls in a table (checkUrlsInTable). Kate
- Fixed memory leak in pslPosTarget. Mark
- Updated pslMap README instuctions to explain chains correctly. Mark
- Added genePredFilter program to discard invalid genePreds created by importing data from
incorrect GFFs. Mark
- Added ability to suppress auto-updates from outside GBiB. Max
- Removed nextItemButton default setting for Human Retroposed Genes V9 and Mouse Retroposed
Genes V6; merged hard-coded description line from hgc into the track description. Rachel
Data changes:
- Rebuilt GO database. Brian
- Updated ISCA link-out to point to NCBI website rather than isca.org. Brian
- Continued building UCSC genes out of GENCODE data. Brian
- Regenerated snp142ExceptionDesc for snp142 (hg19, hg38) to fix incorrect counts (#14189). Angie
- Completed new browser for cat, felCat8 (#14412). Hiram
- Completed new browser for crab-eating macaque, macFas5 (#11174). Hiram
- Added umask check protection the build system to verify local hgwdev users have correct
022 permissions (#14507). Hiram
- Added pslPosTarget and faAlign binaries to userApps build (#14648, #14278). Hiram
- Polished track labels for hg38 ENCODE Dnase track (#14353). Kate