v314
- v314 Preview 1 - 16 March 2015
- v314 Preview 2 - 23 March 2015
- v314 Final - 30 March 2015
Code changes:
- Renamed hgAi CGI to hgIntegrator. Angie
- Added assembly hub support for hgIntegrator. Angie
- Added connections from Table Browser to the GREAT server for mm10 (#14881). Matt, Hiram
- Fixed broken click-through on restriction enzymes track (#15052). Kate
- Updated details page to distinguish older ENCODE tracks from newer ones. Kate
- Allow gff3ToPsl to work with query and target being different sets of sequences (e.g. to map between different genomes). Mark
- Made the hgLogin email site-specific. Max
- Fixed a mirror site crash in the Table Browser's Identifiers button. Max
- Fixed two Table Browser bugs: buffer overflow, inefficiency causing timeout on platypus small table query (#14966, #15064). Angie
- Changed Session tool to perform case-insensitive session name comparison to avoid MySQL clobbering (#15051). Angie
- Tweaked makefile so that top-level build still works on systems without gbdb directory. Angie
- Changed hgc to no longer require l or r cart variables, which are sometimes not present (#15065). Brian
- In support of mirrors and GBiBs, made the dbDb, defaultDb, genomeClade, and clade table names configurable. Brian
Data changes:
- New assembly browser for Xenopus tropicalis, xenTro7 (#9868). Hiram
- New assembly browser for Green monkey, chlSab2 (#11172). Hiram
- Updated and documented lastz tuning procedure (#14513). Hiram
- Created Ensembl Genes update v79 (#15005). Hiram
- Posted corrected supplemental data file provided by HudsonAlpha to hg19 HAIB Genotype track downloads (#14946). Kate
- Completed DNase tracks for hg38 (#14731, #14732, #14733). Kate
- Changed ISCA to ClinGen (they changed their name) in labels and details pages. Brian
- Changed the way ClinGen data is packaged (curated vs. not). Brian
- Built new proteome and uniProt databases for hg38. Brian