v323

Code changes:

• Fixed the "sequences" link on hgGateway, which was using session IDs incorrectly (#16031). Jonathan
• Added functionality to pslCheck program: it now verifies q/tNumInsert and q/tBaseInsert. Mark
• Removed message and 2-second delay from cartReset (#8949). Galt
• Added support (and cache) for UDC redirects (#16012, #16030). Galt
• Added GNU-C attributes to var args function declarations like printf so that compiler can check for the correct arguments. Galt
• Fixed source code to eliminate warnings with -Wunused-but-set-variable (#16121). Hiram
• Added tagStormDeleteTags which deletes selected tags from a tagStorm file. Steve
• Changes to Data Integrator: use custom track db for wiggle CTs (#16037); don't crash when bigWig has no data in region (#16038); need special case for all_mrna, all_est (git f66bc993, 6bf69bab); don't drop large-bin items returned from subsequent chunk queries on large tables (41981de5), several streamers were dropping zero-length insertion items at the start or end of query region - annoGrator was not pairing some adjacent insertions and non-insertions (git 40ed3e54, 5103ccf4, d8be68aa). Angie
• Fixed inefficiency in annoFormatTab for 2x speedup on large queries (git 24f85378). Angie
• Added missing check for table existence to Table Browser (#16125). Angie
• Added "View - In External Tool" menu (#15113). Max
• Added hg.conf option to load custom tracks and hubs from local disk (#16022). Max
• Allow users to turn off the UDC Cache via an hg.conf option (#16022). Max
• Added a new value "lastDbPos" for the position= URL parameter (#16022). Max
• Make use of the "genome" URL keyword result in the browser using the last position. Brian
• Added support for auto OMIM for hg38. Brian
• Upgraded otto scripts for ISCA, geneReviews, and GWAS tracks. Brian
• Fixed a bug in bedToBigBed that was crashing due to integer overflow. Brian
• Upgraded otto script to add an index into decipherRaw (#16107). Brian

Data changes:

• Started work on genome browser for garter snake assembly, thaSir1 (#16028). Jonathan
• Started work on genome browser for brown kiwi assembly, Apteryx australis mantelli, aptMan1 (#16029). Chris
• Updated GENCODE Genes track for mm10 to VM7 (#16129). Mark
• Updated GENCODE Genes track for hg38 to V23 (#16128). Mark
• Completed assembly browser for C. elegans, ce11 (#15209). Hiram
• Ongoing work on multiple assembly hubs. Hiram
• Created many chains/nets between danRer10 and rn6, mm10, hg19. Hiram
• Created many chains/nets between canFam3, mm9, rheMac3 and rn4. Hiram