v327

Code changes:

• Multi-region display. This feature allows users the ability to "slice" up their normal track viewing experience into a variety of different modes: exon, gene, or user defined BED coordinates, and visualize the track annotations only in those regions, effectively removing the intergenic, intron or otherwise unwanted regions from the viewing window (#12242). Galt
• Added a link to malacards from the gene details page: hg19, hg38 (#14417). Max
• Changes to GBiB including getting it ready to support GTEx tracks (#16616). Max
• Added Server Name Indication (SNI) support for HTTPS with certificates for wild-card domains. Galt
• Ongoing work on VAI: added options for transcript status info from Gencode/RefSeq/UCSC Genes (#16502); support for dbNSFP 3.1a (including VEST scores) (#16503); "shortcut button" for adding variant CT goes to add CT page not manage CT page (#16504). Angie
• Fixed a bug in the python framework (#16156). Chris
• Make -minMax option to bigWigAverageOverBed work on empty ranges (#16580). Brian
• Ongoing work to support CRAM, BAM, and tabix using htslib (#14717). Brian
• Fixed incorrect output columns from chainToPsl and added unit tests (#16546, #16588). Jonathan
• Changed relative path calculation to support resources under //. Jonathan
• Added bigPslToPsl and pslToBigPsl to the utils build (#15067). Hiram
• Added documentation about the trackLog option to src/product/ex.hg.conf (refs #16617). Hiram
• Added option to twoBitDup to show the unique keys for each sequence to compare two genome assemblies (#16589). Hiram

Data changes:

• Added APPRIS classification/documentation to GENCODE details display. Mark
• Ongoing work on GTEx gene tissue expression track: hg19, hg38 (#15645). Kate
• Added dbNSFP v3.1a (including VEST scores) to hg38 for hgVai (#16503). Angie
• Finished genome browser for brown kiwi, aptMan1 (#16029). Chris
• Added ucscGenePfam track (#16465). Brian
• Finished work on hg38 patch 5 (#16261). Jonathan
• Created Oxytricha trifallax browser for internal use, oxyTri2. Hiram
• Finished nonCodingRNAs and lincRNAs tracks (#11694). Chris