v331
- v331 Preview 1 - 28 March 2016
- v331 Preview 2 - 4 April 2016
- v331 Final - 11 April 2016
Code changes:
- Added calls to bottleneck sever for more of hgTables; botting for BED files will be delayed appropriately (#17113). Jonathan
- Automated hg.conf updates to reflect our current server setup. Jonathan
- Change hgFind so that it to works with centrally located metadata (#16809). Brian
- Fixed a problem with filtering on genbank metadata (#11174). Brian
- Changed Genbank procedures to allow pushing tables from hgwbeta. Brian
- Fixed bug in hgc for SNP effect prediction of liftUp'd genePredExt tracks with empty exonFrames column (#16777). Angie
- Final changes to support GTEx Gene Tissue Expression track (#15645). Kate
- Fixed a bug where next/prev exon link did not stop at coding region start/end in both directions (#17063). Galt
- Enhanced nextExon mouseover labels to more clearly explain what it does (#17096). Galt
- Suppressed measureTiming track output averages when not in virtMode since these are redundant. Galt
- Fixed two issues in GTEx display when in multi-region mode: better accounting for label width in pack mode; gtexGene for limitedVis full->pack->squish->dense (#17103). Galt
- Fixed problem in pack mode with special exception for altGraphX spaceSavers (#17144). Galt
- Ongoing work on CIRM programs and data warehouse: expMatrixClustersForDendrogram (#16216); kallistoOnFastqMani - Making the script more universal when processing non -paired end data (#16244); cdwCheckValidation - Looks at a submission to the cdw and prints out some stats. Multiple options for various different uses (#17100). Chris
Data changes:
- Deleted xenoMrna track from the 53 assemblies for which it hasn't been looked at in 2016 (#16809). Brian
- Started building UCSC genes for hg38 (#10968). Brian
- Added new procedure for building knownToWikipedia table on hg19 and hg38 (#17052). Brian
- Added new all.joiner rules to use gbMeta database (#16809). Brian
- Finalized patents sequences track for eboVir3, hg19, mm10 (#14486). Max
- Final touches on macFas5 (#11174). Hiram
- Fixed links for NCBI assembly information on gateway pages (#11174). Hiram