v334

Code changes:

• Improvements to the long range interaction track support (via longTabix) (#15232). Brian
• Improvements to bigMaf, bigChain, and bigPsl support (#17325). Brian
• Made the stats calculated by ave more accurate (#15232). Brian
• Added options to gff3ToGenePred to control the creation of the genePred name and name2 fields. Mark
• Fix to prevent ORegAnno track from impacting server performance, even when it's not loaded (#17278). Jonathan
• Release of new cgi hgPublicSessions (#15312). Jonathan
• Table Browser noGenome support regarding OMIM and hgIntegrator OMIM access for non-genome-wide queries (#4458). Angie
• Gateway phylo tree on by default (for mirrors that mirror some or all of our species) and changes regarding dbDb.active (fix for GBiB/GBiC) (#17316). Angie
• jksql: replaced some str* functions with safe* functions to detect buffer overflow (#17327). Angie
• Adding genome-asia to code (#11221). Galt
• Fixed minor html errors found by hgTablesTest (#17499). Galt
• Updated mirror docs with markdown-to-UCSC-html converter, and made GBiC fixes (#14399). Max
• CIRM - restricted-access file downloads for CIRM. Max
• CIRM maniMani - A python script that links up two manifest files in SQL tables so that a file flow chart can be read from the SQL (#16113). Chris
• CIRM sqlToTxt - Program that has been put into library files that reads through SQL tables and generates a javascript representation of a file flow (#16113). Chris
• CIRM d3.dendrograms.js - Changes to improve speed to javascript module for generating radial/cartesian (#16341). Chris
• CIRM: Version number of cdwWebBrowse increased to 0.50 as Max and Jim have made some significant improvements. Changes so that misspelled fields in an RQL query inside of the CIRM software gives an error message rather than just not finding. Additional checks to help prevent a corrupt cdwFileTags table due to case sensitivity/insensitivity. Jim
• Library changes - slightly better error reporting from htmlPage validator for some misplaced tags. Jim

Data changes:

• Added lastz/chain/net per user request panPan2 hg38 refs (#16036). Hiram
• Added lastz/chain/net per user request pelSin1 to galGal4 refs (#17293). Hiram
• Added killer whale orcOrc1 browser build pushQ 007863 for lastz/chain/net cow/bosTau8 per user request (#17425). Hiram