v355

Code changes:

• Updates and streamlining of NCBI RefSeq Genes automation scripts. Angie
• A fixing for a very old highlight bug in hgTracks (#20046). Max
• Addition of ChrisE's cdwBackup script (needed by cdwSubmit) and other CIRM work. Galt.
• Minor GBiB work - fix up gbibAddTools command and edit hg.conf if users are closer to genome-euro-mysql.soe.ucsc.edu (#19276). Christopher Lee
• HGVS enhancements to use genomic reference when deletion spans intron & exon (#19968). Angie
• Stabilization of test cases for HGVS term generation. Angie
• Ongoing work on hgCollection (#11630). Braney
• Copy collections hub when saving or restoring from session (#11630). Braney
• Put the results of wiggle sorting into the cart (#11630). Braney
• Complete GTEx eQTL clusters track handler, details, configuration pages (#15645). Kate
• Work to fixup CRISPR item details click to show no off-targets when there are none (#20077). Hiram
• Clean up of html output for hgTables, giving better results from W3C validation (#18762). Hiram
• Better use of static libraries for libpng, libz and libm, not everywhere yet, but approaching (#9149). Hiram

Data changes:

• Adding a snpedia track (#19811). Max
• Work to revamp uniprot track: putting it onto many genomes ottomatically (#19351). Max
• Import of hg38 GENCODE V27, hg19 V27lift37 (#20144) (#20145). Mark
• Changes for hg38 and mm10 NCBI RefSeq Genes. Angie
• Updates to genbank process due to move to new build machine. Braney
• Tweaks to cosmicRegions track for release (#19932). Braney
• Final polish on GTEx Transcript track (#19350). Kate
• Ongoing work to polish TCGA Expression tracks (#19155). Kate
• Ongoing work polishing data and track config for GTEx eQTL clusters track (#15646). Kate
• hg38 patch11 built and released (#19665). Hiram