v356

Code changes:

• hgIntegrator: added support for bigPsl and other bigBed-based big* formats (#20272). Angie
• Fixed odd extra highlight from some searches (#20245). Angie
• HGVS corner case fix (incorrect shifting from final base in exon). Angie
• HGVS: use p.? for start codon variant and intronic/UTR variants -- can't reliably predict. Angie
• Fixed bug in transMapPslToGenePred where it did not correctly handle CDS gap closing when there is an insertion in the genome. Mark
• Ongoing work on hgCollection (#11630). Brian
• Added new utility udcCacheSizesCheck which can quickly scan for and/or fix udcCache problems. Galt
• Added special case handling in udcCache for sparseData with zero size (#20133). Galt
• Work on GTEx eQTLs tracks (#15646). Kate

Data changes:

• ncbiRefSeq finishing touches (#18997). Angie
  • exclude 'Other' items from ncbiRefSeqLink table
  • link out to MGI for mouse RefSeq
  • tighten all.joiner rules
• Updated NCBI URLs to use https (#17793). Angie
• Updated MGI URLs to latest format. Angie
• New genome browsers ready for QA. Hiram
  1. manLeu1 (#20190).
  2. cerAty1 (#20199).
  3. aotNan1 (#20196).
  4. proCoq1 (#20235).
  5. eulFla1 (#20265).
  6. eulMac1 (#20266).
• Final touches to the new uniprot track (#20174). Max
• Final touches on snpedia track (#19811). Max
• Improving the clinvar track some more (#20268). Max
• Work on GTEx eQTLs tracks (#20236) (#15646). Kate