- v360 Preview 1 - 8 Jan 2018
- v360 Preview 2 - 16 Jan 2018
- v360 Final - 22 Jan 2018
Code changes:
- hgTracks: update NCBI browser links from obsolete Map Viewer to new Genome Data Viewer (#18671). Angie
- Ongoing work on hgCollection (#11630). Brian
- Fixed hgVai bug with custom track for hub assembly (#20798). Angie
- Fixed hgc problem with auto-generated tracks (shortMatch oligo, restriction enzyme cutters, base) on assembly hubs (#20757). Brian
- Fixed problems in hgc for bigBarChart, pgSnp, VCF, bigMaf on assembly hubs (#20775). Brian
- Titles for custom tracks build directly from big files are now limited to 100 chars (#20708). Brian
- Fixed ancient typo in custom code that munged altColor if blue value was zero (#20741). Brian
- Fixed longTabix track display: suppress labels on interchromosomal items if they will overlap (#17512). Kate
- Updated hgGateway assembly search: use hubSearchText table instead of obsolete trix files (#20694). Angie
- Added limit length of hgFind.matches variable in order to prevent cart bloat (#20809). Angie
- Added limit number of results from hgFindSpec-based SQL searches to 500 to prevent excessive output (#20809). Angie
- Fixed bug in chainPreNet where it would output chains from excluded haplotypes. Mark
- Fixed cdw utils to preserve the original date of the submitted file, which helps speed up cdwSubmit for old files as well. They will not have to run md5sum manually if the file date has not changed so it can use the md5 from the record in the database. Galt
- Improved cdwFindSymlinkable so it now handles submits that failed validation. Galt
- Documenting uuid library dependency. Max
Data changes:
- Update NCBI browser links from obsolete Map Viewer to new Genome Data Viewer (#18671). Angie
- 2018 updates of HGMD, Malacards. Max
- New Genome Browsers built and QA ready:
- anoGam3 (#20743). Hiram
- dipOrd2 (#20751). Hiram
- fukDam1 (#20752). Hiram
- criGriChoV2 (#20540). Hiram
- papAnu4 (#20769). Hiram
- cavApe1 (#20770). Hiram
- ficAlb1 (#9870). Hiram
- Added liftover from hg11 to hg19, hg38 per user request (#20736). Hiram
- Added crispr10K track now visible on mm10 (#20077). Hiram
- Updated hg38 ncbiRefSeq* tracks with latest download files (#20108). Angie