v362

Code changes:

• The text search feature on the public hub portal now includes metadata tags on tracks (#18865). Jonathan
• Change to hide patent GenBank mRNA sequences by default in organism-specific and other organism mRNA tracks. A new track control enables selecting to show the patent sequences (# 17968). Mark
• Allow hub.txt file to be 16M instead of limiting it to 256K with new paradigm of hub existing in one file (#11630). Brian
• hgVai: Angie
  • Fixed lack of HGVS g. terms for intergenic variants (#20981)
  • Improved detection of ambiguous placement of PSL indel gaps (#20948)
  • Fixed HGVS p. term single-base duplication: use single pos instead of range
• Fixed sql injection issues with sqlTableLike functions in jksql.c and places that use it (#20974). Galt
• Added gbStatic.css page to style directory for hgCollection help page, will need future addressing (#20968). Brian
• Fix for anti-aliasing dot calls in Kate's arc code. Brian
• On-going work on hgCollection (#11630). Brian
• Fix density graph support to pay attention to the setting in trackDb (#20062). Brian
• Allow blob: to CSP support. Brian
• Let assembly hubs have groups from track hubs(#16200). Brian
• Small changes to the GBiB update script to make it choose whether to connect to genome-euro more efficiently. Christopher
• Added curve drawing (ellipse and bezier) to graphics library. Code by Zingl Alois, 2016, posted to github http://members.chello.at/~easyfilter/bresenham.html (#17512). Kate
• Added track height configuration to longTabix track type. Kate
• Implemented new interact track type -- a pairwise interaction with configurable drawing modes, including curves, and a more full-featured schema than longTabix. Largely complete functionality (#17512). Kate

Data changes:

• Added new NCBI Phenotype-Genotype Integrator, PhegenI, track (#21052). Max
• Work on Genome Browsers felCat9 and petMar3 (#20819). Hiram
• Creation of chainNet between ponAbe2 and panTro4 per users request (#20973). Hiram