v367

Code changes:

• Added hgCustom link to user docs for new interact track type (#21615). Kate
• Added support for barplot display on hgc instead of boxplot (#21548). Christopher
• Added links to GTEx body map page, from hgGene details, hgc for GTEx tracks, and gene sorter column info (#18628). Kate
• Extended LRG track to cover alts, patches, latest format (#18853) (#13359) (#17877) Angie
• Added cpg_lh binary for construction of cpgIslandExt track to user apps release, added documentation to usage message for better explanation (#21617). Hiram
• Fixed expMatrixToBarchartBed to allow extra fields in bed input (#18508). Christopher
• Fixed bedJoinTabOffset to allow multiple mapping bed items (#18508). Christopher
• Fix for a Safari problem where ready function is not called after back button (#21540). Brian
• Modified RR userDb limit to increase to 20 GB. Galt
• CIRM: Fixed downloads to ignore old filter method which has been replaced by faceted search (#21511). Galt
• CIRM: Fix to prevent race conditions happening when computing paired end concordance where the -noBackup option to cdwSubmit will allow you to avoid this time consuming step when doing multiple cdwSubmits one right after the other. Jim
• CIRM: Improvement to now use bowtie as the aligner, which is 15x faster than bwa and consumes around 1/10 of the memory. Max

Data changes:

• Added horse/equCab3 genome browser, now QA ready (#21223). Hiram
• -Added idXref setting to GENCODE tracks so users can search for ENSG* IDs (#21571). Angie
• Added hg19 Patch13, now QA Ready (#9869). Hiram
• Minor updates to gnomAD track (#18951). Jonathan