- v368 Preview 1 - 25 June 2018
- v368 Preview 2 - 2 July 2018
- v368 Final - 9 July 2018
Code changes:
- The gnomAD track now correctly provides links out to that resource (#18951). Jonathan
- Fixed error in view sequences page to correctly display genome sizes over 4Gb (#21715). Hiram
- Added support for url, urlLabel and extraFields trackDb settings for bigBarCharts (#18508). Christohper
- Enhance expMatrixToBarchartBed to now work for input with extraFields as advertised on the barChart help page. Christopher
- Fix small bug for fetchChromSizes (#21637). Christopher
- Expanded liftOver for multiple support from BED 4-6 to BED 3-12 (#18853). Angie
- Updates to various automation scripts to support addition of patch sequences (#18853). Angie
- Enhance hgTracks multi-region mode support for _fix patch sequences (#18854). Angie
- Added new program chainBridge to close double-sided gaps that skip similar sequences (#21651). Angie
- Added new program agpAlign to produce PSL mappings of identical contigs in different assemblies (#21650). Angie
- Fix problem with Date last updated on interact tracks (#20546). Kate
- Fix problem with hgGtexTrackSettings not setting current track for table browser. Affected GTEx Gene and GTEx eQTL tracks (#21633). Kate
- Adjusted parasol hub cloud instance setup script to work with Amazon AWS system as well as OpenStack (#18874). Hiram
- Changed a place in hgFind from BIGNUM to INT_MAX to fix bug in ambMex1 browser. Braney
- CIRM: Added organ facet to files browser. Jim
- CIRM: Removed a rarely used and slow feature (browse/tags) from cdwWebBrowse. Jim
- CIRM: making genome browser bigDataUrl links work again. Adding a message of the day html file to cdwWebBrowse. Max
- CIRM: Adding new facet biosample_cell_type, and changing facet order as requested by Jim. Galt
- CIRM: Adding hg.conf settings so that developers and testers can play with the facet order without recompiling. Galt
Data changes:
- Fixed up confusion in gateway description pages about what assembly name means. It is not an NCBI given name (#20970). Hiram
- Added miRNA tissue atlas expression track (#18508). Christopher
- Finish examples for interact track file format FAQ (#21615). Kate
- Creation of temporary experimental databases grcHhh38, grcH38P11 and grcH38P12 for testing addition of patch sequences to existing db, on hgwdev-demo5 (#18853). Angie
- Work to support for s project and a Gencode mouse track that is not being pushed public. Mark
- Added information about meta, metaDb, and metaTab to track hub documentation. Braney
- Added new patch 12 mappings to grcHhh38 genbank haplo maps. Braney