- v371 Preview 1 - 27 Aug 2018
- v371 Preview 2 - 4 Sept 2018
- v371 Final - 10 Sept 2018
Code changes:
- Fixed correct reference to https for hgwdev.gi testing in the preview2TablesTestRobot.csh (#21989). Hiram
- Little tweaks to bigBarChart parsing, and enhancing External Tools to CRISPOR for larger regions (#22013). Max
- Making valid assembly links clickable in hgHubConnect (#22012). Max
- Making down arrows for hgTrackUi on signal tracks, genes tracks to help discover menus (#22014). Max
- Allowing non-existing chroms with wigToBigWig -clip option. Max
- Enhancement with more detailed parsing errors for custom tracks with declared type= such as the number of columns for each data type (#21967). Angie
- liftOver: Check for out-of-range -bedPlus argument (#22004). Angie
- Fix for a bug in VAI for deletion across exon/intron splice on - strand (#22029). Angie
- Extract RefSeq Annotation Release from GFF header if present (#21984)
- Fixed problem with byterange and double redirect in net.c, for example hubs and tracks hosted on hgwdev. Galt
- Changed cse subdomain to soe in many many files. Galt
- Fixed genome-source URLs to use gitlist syntax with subdomain changes. Galt
- Added CGI exit time to hgGateway for debugging and consistency with other CGIs. Galt
- Fixed bamToPsl to work on huge BAMs (for HCA). Braney
- Added bamSplitOnChrom to tree (ChrisE wrote it) (for HCA). Braney
- Statically link ssl and crypto in browser build (reversing earlier change). Braney
- Fix native bigChain support (#16402). Braney
- On-going work on bigBed filtering (#20227). Braney
- Put custom bigBed labels in hgFind reports (#22006). Braney
- If db is not in URL, but genome is, use it for db (#22012). Braney
- Extended trackDb setting for interact track, to support offset source/target endpoints. Syntax: interactDirectional offsetSource|offsetTarget|on (#21917). Kate
- Added UI checkbox to interact track, so user can suppress dashed appearance of reverse direction interactions: Draw reverse direction interactions with dashed lines. Kate
- New CGI for short linking to sessions, (#8520). ChrisL
- Minor bug fix for getMatrixLines.csh found by Jairo, (#20979). ChrisL
Data changes:
- Build of Gencode v29 knownGene tables, hg38, (#21644). Braney