v372

Code changes:

• Flipped display (hills instead of valleys) for interact tracks, activated by trackDb setting interactUp on (#21917). Kate
• Expanded url trackDb setting to handle $ variables (currently just works in interact track type). (#22078). Kate
• Bug fix: interact track ellipse drawer hangs when drawing dashed lines (#22068). Kate
• Bug fix: barChart track goes beyond box (when trackDb settings inconsistent). Now prints more informative error message (#22058). Kate
• Added a tool to correct chromosome ranges in an interact file: interactFixRanges. Not in user utils set, but could be. Maybe better to incorporate into a validator. Kate
• Autocomplete for alt haplo (and fix) sequence names in multi-region config dialog (#18854). Angie
• Updated Augustus gene predictor to latest version, for new hgwdev & cluster OS. Angie
• Identified libs required for ancient binaries on new hgwdev & cluster; cluster-admin installed. Angie
• Fixed a problem with setTimeout usage and CSP protections for python lib. Galt
• Fixed gtfToGenePred conversion problem where final CDS exon had incorrect frame. Mark Fix for bigWig open problem and connection open problem in calculated tracks (#22088). Brian
• Removed check for cart stuffing bot (#22109). Brian
• Add bigWarn errors to error_log. Brian

Data changes:

• Genehancer track for hg19 and hg38 (#22048). Kate
• Added a needed note about translated queries and coordinates to PSL in formats FAQ. Galt
• Added dm6<->droSim2 lastz/chain/net per user request refs (#22074). Hiram
• Assistance with anoGam3, thaSir1, browsers through QA process (#16028) (#20743). Hiram
• Added an experimental xenoClinvar track based on liftOver to mouse. Max
• Made small adaptations to phegeni track (#21052). Max
• Continuing work on UCSC Genes v29. Brian