- v376 Preview 1 - 17 Dec 2018
- v376 Preview 2 - 7 Jan 2019
- v376 Final - 14 Jan 2019
Code changes:
- Added lineFileCarefulNewlines() for parsing user data with mixed newline styles, e.g. concatenated Windows and Mac files (#22638). Angie
- Added format checking of uploaded session files (#22638). Angie
- Added detection of unencoded newlines in old saved session files (#22637). Angie
- Added support for in-progress Txn Factor ChIP (ENCODE Regulation) track update for ENCODE 3/4 (#21139). Kate
- Made hubCheck more resilient when trackDbHub spec file is mis-formatted (#22714). Kate
- Fixed bug in interact track details page: interaction region in clusters mode (#22750). Kate
- Cleaned up some code warnings by gcc-7 version (#22738). all
- Improved efficiency for large MAF displays when display 'coding exons by reference species’. The other display modes have also improved by adding an index to the SQL table. (#19937). Hiram
- ClinGen CNVs track items are now named '*_unk' instead of '*_not provided' when the variant origin is not provided (#22757). Jonathan
- Fixed cartReset to disallow Open Redirect for security (#22596). Galt
- Fixed hFindSplitTable which had several flaws relating to security (#22596). Galt
- Added new script to save OMIM records that drastically change between OMIM releases. Chris
- Fixed bug in hgSession where session thumbnails were not generated when short links were present (#8520). Chris
- Updated otto scripts to use new dbSNP 151 (#18151). Chris
- Fixed table schema for bigBed track tables to now show update time of the file, not the table (#22619). Chris
- Added bottleneck delay to all of hgc (#22693). Chris
- Ongoing work on bigBed field filtering. Brian
- Fixed a problem with pslCDnaFilter on large query sequences. Brian
Data changes:
- Initial layout for a RefSeq/HGMD and a RefSeq/MANE track on hg19/hg38 (#22659). Max
- Created a tabula muris single cell track on mm10 (#21811). Max
- Created C. elegans/ce11 135-way multiple alignment (#22599). Hiram
- Created D. melanogaster/dm6 124-way multiple alignment (#22550). Hiram
- Created Chicken/galGal6 77-way multiple alignment (#22687). Hiram
- Started prototype for Amino Acid frequency track display on staAur2 (#19937). Hiram
- The CIRM CGI cdwWebBrowse more closely matches the look and feel of the CIRM static HTML pages (#22765). Jonathan
- Re-indexed a host of knownGene tables for hg38. Brian
- Built CDS FASTA download files for hg38.ncbiRefSeq. Brian
- Ongoing work on checking in and documenting genbank alignment process. Brian