- v379 Preview 1 - 4 Mar 2019
- v379 Preview 2 - 11 Mar 2019
- v379 Final - 18 Mar 2019
Code changes:
- JSON data API interface to U.C. Santa Cruz genome browser data hubApi under development with test site available: https://hgwdev-api.gi.ucsc.edu (#18869) Hiram
- findMotif command updated to allow 32 character motifs and specified number of mis-matches. Hiram
- Fixed a bug in twoBitMask where freed memory was being accessed (#22704). Brian
- Fixed a bug to avoid crash, but do abort, if a subtrack of a composite doesn't have a type (#22541). Brian
- Addressed an issue where when we're disconnecting assembly hubs, we need to remove any custom tracks loaded on it (#22540). Brian
- Fix for right-click pop-up being called through AJAX where to draw a single track, make sure to load any composite parents as well (#23027). Brian
- Changes to take out reference to stackoverflow and related code snippet (#22783). Brian
- Add support for bigGenePred with no table as a native track. Brian
- Fixed GENCODE tracks with links to HGNC (#23133). Mark
- Fixed bottleneck issue in hgGeneGraph (#22999). Max
- Added two small tools: tdbRename and tdbSort, useful for tabula muris mm10 track (#21811). Max
- Added hubClone utility to userApps (#13428). Christopher
- Fixed hgc bug where different results from the clicked item in hgTracks were displayed (#22996). Christopher
- Work on Error log crawler that makes a co-ocurrence matrix of tracks that are used together (#21785). Christopher
- Fixed hgSession custom track backup to wait when the background process is slow starting up (#23071). Galt
- Fixed missing NULL check in annoStreamVcf. Angie
- Fixed udc to be set up properly in hgIntegrator. Angie
- Fixed several CGIs that were not setting lastPosition cart variable and fixed hgFind to have no more html open/close (#22945). Angie
- Fixed where cartWebStart was setting db to "(null)" in a few cases. Angie
Data changes:
- Prototype test track for entire genome hg19 crispr track loaded for inspection and will be recalculating. Hiram
- Stop pushing ccdsKgMap as a standard Genbank table since this changes with knownGene. Brian
- Stop automatic download of new Genbank releases because their updates are NOT atomic. Brian
- New Gencode VM20 as knownGene for mm10 (#22997) Brian
- Work on RefSeq MANE track (#23113). Brian
- Work on Mastermind track (#21895). Max