- v380 Preview 1 - 25 Mar 2019
- v380 Preview 2 - 1 April 2019
- v380 Final - 8 April 2019
Code changes:
- Added detection to VCF custom track for when type should be vcfTabix instead of vcf (#23248). Angie
- Added missing track hub support to vcfUi (#23252). Angie
- Added new display type for variation & frequency data called a lollipop display (#18845). Brian
- New feature for hgSession for when saving sessions if configured to move trash files and customTrash tables to non-trash locations (#22440). Angie
- Added support for db.table notation to jksql lib in all commands that have table param (#22440). Angie
- Added code to not reuse ctfile_$db files, so we don't have to copy on session save/load (#22440). Angie
- Fixed bug in hgLogin for GBiC product (#23202). Max
- Removed pslToBigPsl warning about missing CDS, as this is an expected occurrence for non-coding genes which can generate tens of thousands of warnings. Mark
- Ongoing work on RESTful JSON API (#18869). Hiram
- Enhancements to expMatrixToBarchartBed to allow alt chromosomes and more correctly parse and output floats (#23218). Christopher
- Creation of new tools for Transcription Factor ChIP-seq (ENCODE Regulation) tracks (#21139). Kate
Data changes:
- New Genomic Data Commons (GDC) Cancer track with GDC pecan33 data. Includes bigBed multiple choice filters and lollipop display (#22742). Brian
- Added CDS FASTA downloads for Gencode VM20 for mm10 (#22997). Brian
- Added ID search to MANE track (#23113). Brian
- Work on ENCODE 3 TF binding site track (#21139). Kate