v382

Code changes:

• Code enhancements to factorSource track type for ENCODE 3 update to TF Factor Clusters track (#21139). Kate
• Bug fixes to composite track UI matrix - fix non-working +/- buttons on bottom of matrix. (#20532). Kate
• Bug fixes to composite track UI matrix - fix non-working column +/- buttons on bottom of matrix. (#23452). Kate
• Initial commit of Hi-C draw support using .hic files and the Straw C++ library from the Aiden Lab at Baylor College of Medicine (#18842). Jonathan
• For bedToBigBed with a user defined schema allow BED itemRgb field to be name itemRgb instead of reserved. This matches behavior matches the existing documentation (#23499). Mark
• Small improvements in hgBlat All Genomes output explanation. Galt
• Improvements to htmlCheck. Galt
• Swapping facet field order as requested for cdwWebBrowse. Galt
• Removed warning messages from barChart R code that happens only on the RR (#23024). Max
• Fixed hgTracks highlights at high zoom resolution (#23349). Max
• bamToPsl skips unaligned input sequences as noted by the asterisk CIGAR string, (#23506). ChrisL
• New utility ucscApiClient for sending queries to the API, (#23506). ChrisL
• hubCheck does a few checks for missing or incorrect parent/children references, (#13428). ChrisL
• On going lollipop work: draw outlines around lollies, use bigBed drawing modes on lollipops in pack mode, added squish mode for lollies (#22742). Brian
• Change hideKids to work regardless of the value given it (#23502). Brian
• Create new advanced mode for bigBed filters. Brian
• New jsonQuery lib/util and lib extensions for processing dbSNP JSON (#23283). Angie
• New binFromRange util to get bin constraints from position range. Angie
• Refinements to hgSession/sessionData.c for saving old sessions (#22440). Angie
• Wrapping up hubApi for release (#18869). Hiram

Data changes:

• ENCODE 3 TF ChIP-seq tracks, ready for QA (#21139). Kate
• ENCODE 3 TF ChIP-seq Uniform tracks, ready for QA (#23243). Kate
• Added new singlecell.html page (#22679). Max
• New DGV Gold Standard Copy Number Variants track, (#23371). ChrisL
• Ongoing work on gdcCancer track featuring mollies (#22742). Brian