v386

Code changes:

• hubCheck now outputs data for the hgHubConnect CGI (#13428). ChrisL
• Fixed hubApi to allow data fetch from a bigGenePred when it is only a bigDataUrl and has no corresponding SQL table (#23900). Hiram
• hgc BLAT results: sort by score instead of file order (#23865). Angie.
• Added IPv6 support for site. New listening processes uses hybrid dual stack feature of OS to simplify implementation and use a single listening socket. New approach works with both TCP and UDP. Parasol working now with IPv6, geoIp also updated and ready for IPv6. Changes should be invisible to most users, while providing connections via IPv6 where available. Overall site supports both ipv4 and ipv6 (#23405). Galt
• gfServer: added -perSeqMax=file option, for assemblies with many alt/fix sequences (#23112). Angie
• Bug fix: Bad link in Donate button on site pages (#23878). Kate
• Fixed a bug in hubClone when trackDb.txt reference location was in current dir, (#23850). ChrisL
• Adding new utility blatServersCheck to make it easy for people to check the consistency of the blatServer tables against the actual gfServers running on blat machines. Galt
• Fixing Clinvar otto job to not leave behind broken bigBeds (#23948). Max
• Automatic assembly hub construction scripts improved, added construction of a Xeno RefGene track for any assembly hub (#23734). Hiram
• hgTables: support bigBed autoSql enum/set filters. (#23925) (#23926). Angie
• Fix for crashing bug when an unaligned mRNA was found by hgFind. Brian
• Fix problem when setting visibilities of hub-based subtracks with undecorated names (without the hub_) (#23872). Brian
• Let umask decide what modes should be set on created files. Brian
• Added mafNoAlign utility. Brian
• Fixed a few bugs in Hi-C parsing, and stopped relying on .hic files to know which assembly they annotate (#23853) (#22316). Jonathan

Data changes:

• Ongoing work on Mouse ENCODE tracks (#23970). Kate
• new omimGeneMap2 tables and CGIs updated accordingly, (#23863). ChrisL
• Upgraded MANE track to 0.6 (#23873). Brian
• Added an index to hubUrl in hubStatus to speed performance (#23945). Brian
• Updated links to GO from hgGene (#23939). Brian