- v390 Preview 1 - 21 Oct 2019
- v390 Preview 2 - 28 Oct 2019
- v390 Final - 4 Nov 2019
Code changes:
- hgTracks/hgc/hgTrackUi: new track type bigDbSnp (#23283). Angie
- Add support for "autoScale group" in trackDb (#24365). Brian
- Allow dot . in FilterType statements. Brian
- Add code to change the longLabel of bigBeds to say how many items are filtered out (#24383). Brian
- If trackDb mentions filters on specific names that aren't actually in the AS file, for a few standard names assume that they are in a fixed location. Brian
- Improved performance for hic tracks in auto-scale mode (#24308). Jonathan
- hgTrackUi: in VCF filters, if there is only one value in list then no set/clear buttons (#21784). Angie
- hgIntegrator: deal with savedSession customData*.t1... table names in asObjectFromFields (#24358). Angie
- New tiny chromToUcsc tool to convert (currently BED files) from Ensembl or NCBI chrom names to UCSC ones (#24407). Max
- Added bedPartition. It produces a list of ranges of regions with no overlap with BED records from other regions in the file. This is useful for partitioning data for cluster runs. Mark
- Ongoing work on new 'hideEmptySubtracks' setting (#23365). Kate
- hubSearchText table has two new columns, parents and parentTypes,
for speeding up the drawing of the hub search tree on the CGI end
(#23812). ChrisL
- Added knownAttrs to the list of default hg38 tables on the GBiB
(#24398). ChrisL
- Added bigLolly to the list of types checked by hubCheck (#24177). ChrisL
- CIRM: Added a reset button and fixed the limit so it now runs fast (#23228). Galt
- CIRM: cdwWebBrowse oneFile page: Added download link that lets the user download the file with its original submit name rather than the accession id (#23228). Galt
Data changes:
- dbSnp153 (also dbSnp152) and subsets {Common,ClinVar,Mult}. First use of new bigDbSnp type (#23283). Angie
- Quick addition of the Illumina GDA probeset track for ASHG (#24320). Brian
- Initial build of Southern Sea Otter assembly - enhydra lutris nereis (#21152). Jonathan
- LRG update (#24285). Angie
- QA Ready crisprAll for mm10 (#24296). Hiram
- 7-way alignment work for regenRn1 rat,mouse,rabbit,human,crab eating macaque, pig, dog (#21579). Hiram
- Moving the LOVD track to a composite, one subtrack has the short less than 100bp variants, one has the longer more than 100bp variants, like clinvar (#24408). Max
- Completed Mouse ENCODE Regulation tracks -- now released (#23880). Kate
- Completed gnomAD variants track -- now released (#21782). Kate