v391

Code changes:

• Added collapsible panel to details page when clicking on foot of interact (#24409). Kate
• hgc fix: gbCdnaInfo was used for ncbiRefSeq CDS, should be ncbiRefSeqCds (#24554). Angie
• Added RNA and CDS length to clusterGene output for easy access for post-processing. Mark
• Little tool chromToUcsc to convert NCBI/EBI chrom names to UCSC chrom names (#24407). Max
• New util for archiving tracks, (#21825). ChrisL
• Added a test hub to the source tree with many common hub configuration mistakes for regression tests. ChrisL
• Add some auto-recognition of bigNarrowPeak filters that don't have the correct field names in the AS. Brian
• Added showCfg trackDb variable to automatically open settings for a view in a composite. Brian
• Added filterValuesDefault variable to allow setting defaults for filterValues. Brian
• Allow filters to be specified with a format like "filter*.fieldName" Brian
• Fix links in hgHubConnect to use lastDbPos. Brian
• Added logging of current position in error_log. Brian
• Stopped making a distinction between floats and ints in bed filtering. Brian
• Added filterLabel for labeling bigBed filters. Brian

Data changes:

• gorGor6 browser built on gorilla assembly GCF_008122165.1 (#24524). Hiram
• New track: special regions (name in progress) with regions that are hard to sequence or lead to other problems (#24245). Max
• New track: Variants in Papers / AVADA track with genome variants mentioned in full text papers, with Gill Bejerano (#24156). Max
• Documentation for Hi-C track type, including custom tracks and track hubs (#22316). Jonathan
• dbSnp153: ongoing updates w/suggestions from Ana and Lou, mainly adding ucscNotes and a new subtrack for mappings with internally inconsistent coords, instead of simply dropping items with errors (#23283). Angie
• New gnomAD variants for hg38 (#21782). Kate
• New Mouse ENCODE Enhancer/Gene Interactions track (#23881). Kate
• New myGene2 link-out from hgGene on hg38. Brian
• Generated new CDS FASTA files for multiz30way. Brian