v392

Code changes:

• gnomAD pLI track has a color legend show up in hgTracks under the track image (#20394). ChrisL
• Changed lollipops to use color in field 9 instead of binning color scheme which no one liked (#24705). Brian
• Fix for hgTracks: bigDbSnp dense mode colors (#23283). Angie
• hgTrackUi: BAM: apply same base & indel coloring defaults as hgTracks (#24674). Angie
• hgc: VCF with genotypes: report counts correctly when there are >2 alleles (#24623). Angie
• Changed lollipops in pack mode to draw smaller pops instead of going into bed mode (#24705). Brian
• Improved processing steps in assembly hub creation scripts refs (#24354). Hiram
• support _sel and _hideKids in multiwigs (#24544). Brian
• Added version number on cached trackDb contents. Brian
• Added the groking of filter* lines to tdbQuery. Brian
• Bugs fixed in hubApi for sequence DNA return from nib file based assemblies refs (#24666) Hiram
• CIRM: cdwCheckValidation status report now includes success/failure counts for the most recent submission of each file, not just since the beginning of time. Jonathan

Data changes:

• Species images from VGP project added to the source tree. Hiram
• globalReference assembly hub completed (#24354). Hiram
• primate assembly hub completed Hiram
• NCBI RefSeq update to hg38 refs (#24604). Hiram
• Initial commit of documentation for Enhydra Lutris Nereis (southern sea otter) build (#21152). Jonathan
• Removed duplicate lines from hg38 knownToEnsembl and knownToGencodeV32 (#24697). Brian
• gnomAD pLI track staged on dev, (#20394). ChrisL
• More work on AVADA: Automatically curated VAriant DAtabase (#24156). Max
• Adding trackDb for Angies liftOver/Remap track, (#24449) (#24707). Max
• Adding prominent link from children to parent supertrack (#24664). Max
• First go at adding a CADD track (#18492). Max
• HGMD 2019 update (#24625). Max