- v393 Preview 1 - 13 Jan 2020
- v393 Preview 2 - 20 Jan 2020
- v393 Final - 27 Jan 2020
Code changes:
- Expanded maximum number of subgroups in composite to 1000 (#24652). Kate
- Fixed recently introduced bug for VCF FILTER when header defines only one value (#21805). Angie
- Added download option to hubClone for completely copying a remote hub to local (#24835). ChrisL
- Added gnomAD related build scripts to makedb/gnomad. ChrisL
- Added code if IPv6 is disabled, retry with IPv4-only listening socket. Tweak packet ip address filtering routine to tolerate the IPv4 address format (#24730). Galt
- Changing destination filtering in cartReset to reject any url with "//". Reported to us as XSS violation (refs#24750). Galt
- Fixing htcDnaNearGene to use cartWebStart so that it has a standard header protecting the page with CSP (#24750). Galt
- Changing cartReset to use CSP meta head to suppress XSS javascript in the destination CGI parameter (#24750). Galt
- Incrementing BLAT version makes it easier to do the gfServer rollout as we can easily identify the newest version that tolerate IPv6 being disabled. Galt
- Extended hideEmptySubtracks setting to handle multi-view composites appropriately (#23665). Kate
- Tweak to trackDb caching to make sure memory in hashes is not freed later on. Brian
- Fixed problem with autoscale with group on stand-alone tracks (#24770). Brian
- Fixed broken singleList filtering. Brian
- Created trackDb cache directory if it doesn't already exist. Brian
- Fixed hgMirror knownGene bug (#24741). Max
- Added assembly hub ability to the NCBI RefSeq build script (#23891). Hiram
- Cleaning up procedures to create assembly hubs (#24748). Hiram
- Working on mechanism to relate Ensembl release v99 to sequences. Hiram
- Added option to use parallel sort for pslPartition and bedPartition. Mark
Data changes:
- Added rCRS mitochondrion NC_012920 to hg19 as chrMT (#24648). Angie
- In progress: fixing hg38 Self Chains to remove some trivial self-alignments that sneaked in (#24694). Angie
- Supporting files for build of Enhydra lutris kenyoni (northern sea otter) (#24790) Jonathan
- gnomAD missense track staged on dev, (#20394). ChrisL
- gnomAD tracks merged into a super track on hg19, (#24751). ChrisL
- dgvMerged and dgvSupporting tables turned into bigBeds so trackDb filters can be added, (#24749). ChrisL
- More work on the AVADA track (#24156). Max
- ClinVar support for chrMT (#24648). Max
- New NCBI RefSeq subtract, RefSeq Select (#24787). Max
- LOVD support for chrMT (#24792). Max
- New track Clinvar Lift for mm10, danRer11 and bosTau9 (#24825). Max