- v394 Preview 1 - 3 Feb 2020
- v394 Preview 2 - 10 Feb 2020
- v394 Final - 17 Feb 2020
Code changes:
- The public sessions gallery now displays the most recent first by default. Ordering is also more granular to the second instead of just to the day (#21228). Jonathan
- Bug fix - link to GTEx portal on GTEx gene details page (#24860). Kate
- Changed mouseover on GeneHancer elements to show element type, was unhelpful exon number (#23903). Kate
- Fix bug with group autoscale and custom collections in add/subtract mode (#24862). Brian
- Reverted ability for trackDb variables to have no value ( #25007). Brian
- Fixed bug in trackDb caching when track doesn't exist. Brian
- Use mitochondrial genomic code on chrMT. Brian
- Fix bug in table browser on sequence output with bigBeds and identifier list (#24916). Brian
- Label trackDb cache files with the trackDb they're made from (support for sandboxes). Brian
- Fixing missing filterValues dropdown for subtracks (#24795) Christopher
- Added a -c check option for archiveTracks.sh so you can check what would be backed up. Christopher
- Added -download option to hubClone to download big files. Christopher
- hgTracks: chain trackDb scoreFilter setting was ignored; fixed (#24695). Angie
- Prevent integer overflow for extra-large gap penalties in gapCalcCost (#21650). Angie
- Assembly hub build procedure scripts improved (#23891). Hiram
- Added -minOverlappingBases option to set a threshold for merging transcripts into a gene cluster. Mark
- Adding the first round of filters to ClinVar using the new amazing Braney/Lou bigBed filters (#24850). Max
- Changing the wrench icon composite configure link a little (#24372). Max
- Adding a big message to the table browser pointing to Lou's precooked GTF files (#24810). Max
- CIRM cdwWebBrowse: New top-bar shows selected facets and their values for easily seeing what has been selected. Can now easily click to de-selecting a facet-value. Added an explicit button for clearing the Restrictions. Galt
- CIRM cdwRenameDataset: extend help to remind users further action required. Galt
- CIRM cdwWebBrowse: Improve placement and behavior of the Clear-All-Facets button. Galt
- CIRM cdwRenameDataset: Now fixes metadata that we had overlooked in cdwRenameDataset. Galt
- CIRM Portal: changing default html page from index.html to cirmIndex.html so that it does not collide with htdocs from genome browser and both software projects can have do make in their htdocs without colliding. Galt
Data changes:
- Added user-friendly downloads file for TF Clusters (#24848). Kate
- Documented missing hg.conf variables (#10529). Brian
- wuhCor1 browser built and released (#24851) Hiram
- Ensembl gene v99 tracks loaded on hgwdev genome browsers, preparing 'archive' versions for hgdownload release (#24963). Hiram
- More fixups to pLI and missense constraint track (#20394). Christopher