v396

Code changes:

• "Validate Hub" changed to "Hub Development", added buttons to load the hub, and add checkboxes to add measureTiming and udcTimeout when loading the hub (#24559). Christopher
• VCF mouseover labels: corrected for chrY & multi-alt variants (#25165). Angie
• VCF haplotype display: new option hapClusterMethod with fileOrder (#25197). Angie
• hideEmptySubtracks feature: Updated syntax and fixed issues with usage on hubs, ready for full deployment (#23365). Kate
• Added a USE_HIC variable to the makefile options that can be used to skip compiling in support for Hi-C files via the Straw C++ library (#24414). Jonathan
• Fixed browserSetup.sh to allow the user to specify a list of assemblies to update, or leave blank to update all assemblies (#25111). Galt
• Various long overdue changes to uniprot parser, also for otto updates (#25192). Max
• Add version numbers to programs that make bigBed and bigWig files. Brian
• Some tweaks to number printing in hgTrackUi to not go into scientific notation when not useful (#25006). Brian

Data changes:

• An analysis set for hg19.p13plusM (#25100). Max
• Nextstrain (Genes, Clades, Vars) tracks for SARS-CoV-2 (#25188). Angie
• Customize and expand SARS-Cov-2 description page to include disease/pandemic summary text, graphic of transmission spread, and links to external resources (#25185). Kate
• 12-way multiz conservation track on danRer10. Hiram
• wuhCor1 browser enhanced with multiple alignments (#25090). Hiram
• Assembly equivalence table loaded into hgText.asmEquivalent, 2,118 entries (#24547). Hiram
• Assembly hub collection present and available on hgdownload 22 primates, 106 mammals, 65 birds, 76 fish, 25 other vertebrates e.g.: https://hgdownload.soe.ucsc.edu/hubs/primates/ (#23891). Hiram
• - Various small covid-19 tracks (#25189), (#25190), (#25090). Max
• Tweaks to NCBI Gene track on wuhCor1 (#25114). Brian
• Added mafSNP mode to wuhCor1 (#25115). Brian