v400

Code changes:

• New autocomplete in position bar clicks the go button (#25703). Max
• Allow copy/paste of position in hgTracks (#25678). Max
• VCF: support up to 64k genotypes, including haplotype+tree display (#25278). Angie
• Allow bigBed extra fields to be just a URL (no redmine, email from Chris). Max
• Completed changes for ENCODE Candidate cis-Regulatory Elements (cCRE) tracks for hg38 and mm10 (#24668). Kate
• Fix for track config page crash when obsolete setting, dividers, is used improperly. Public hub Cotney tack rep_cf_segments had this issue (#25713). Kate
• Fix new bug causing incomplete page on track config page for supertrack members when HTML missing (as on many hubs) (#24948). Kate.
• Fixed BLAT on mac issue by adding compiler optimization pragma just where needed in the doubly-linked list library. Incremented the BLAT version number. 36x7 or newer has the issue fixed (#25700). Galt
• First step towards a trackDb docs converter (#25745). Max
• Omim bigification and details page changes (#18419). Max
• New util faToVcf for extracting single-nucleotide variants from multi-sequence FASTA alignment. Angie
• Tree manipulation python scripts and modules that for David et al. (#25278), (#25382). Angie
• Modified trackDb caching so it will ignore the cache for five minutes after a trackDb update, and then update the cache. This addresses the non-atomic way tables are updated with rsync. Brian
• Merged in work on the new gencode merged gene set. Brian
• Fixed bug in mafGene that was not counting 1bp exons. Brian

Data changes:

• Added wuhCor1 tracks: phyloCSF (#25644), addgene (#25683), Kim IVT (#25708). Max
• Fix bad formatting on trackDbDoc pages, introduced mid-March, causing 'expand details' section to fail (#25753). Kate
• Added CODIS session submitted to public sessions (#21399). Hiram
• panPan3/bonobo browser built and ready to set QA ready (#25720). Hiram
• Epitopes track updated for wuhCor1 (#25295). Hiram
• VGP updated assembly hubs just about ready for release (#25555). Hiram
• Nextstrain changed clades: make subtracks for old and new (#25188). Angie
• Remake of dm6 mafGene alignments. Brian
• Incorporated some data fixes to PhyloCSF on wuhCor1 from github (#25644). Brian
• Added MANE 0.9 (#25665). Brian
• ClinGen Dosage and ClinGen CNVs tracks (#25562). Christopher